Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0903 ATGAAACAACAACAACAACATAGTATCCTATGTAAAACCACAGTACACGAAAGTGTCACTAAGAAATACATAACACCAAAAAGAAACATCAATGCAAGGAACAACACAAACAACAAAAATTCTATTCAAACCGAGTTACCAAAAATGATTCGCGTAATAGTTACTGATCCAGATGCTACTGATACTGATTCATCCAGTGACGAAGAATCACAGTTTATAATCCCTCGCCGGAGAATCAAACAGTACGTCAACAAAATCGAAATCGAGACGGTCGTTTCAACGGTTTCCCGTAATAAGAAACGGTCAGCCAGAGAGATGAAATCTTCCCGGAGACCGGCGAAGGTTGCAGCAATCCCCGGAGACGAGAGGAAATTCCGAGGTGTACGGATGAGACCGTGGGGAAAATGGGCGGCTGAGATTCGAGATCCTGTAAGCCGTGTACGGTTGTGGCTGGGAACCTTCAGCACCGCAGAAGAAGCTGCTAAGGTTTACGACGCTGCAGCTATTAAGTTTCGTGGTAAAGACGCTGTTACTAACTTTTCCACATCGCCGCCGGTGGTTGAGAATGTAGAAAAAGCTGAAGCTGTAAACAGAACAACGACAATGAAGGTTGACGAAATCAAAACCGAAATATCCGTTTCCGGCGAAGATTCCGGCGATGAGTTTGTTAATCTATCTTCTCCGACGTCTGTTCTCCGGTTCAGACCTGATGAAATTAATGAATCAAATAAACCGGAAGAACCAATTTTTGACTCTGAACCCATTGAACCGACTGAACTAGTTATTGAAGGTGAACCCGTTGAACCCACCGAGCCGGTTGGTGAATGTGAAACGAGTTTTTTCGACGAAACTAATGAGATTTTCCGACAGGAAACGGAGGACGTGTTTAATTTTCCAACAACTTGTGATTATTATTACTCAAACATGTTTGATGAAGCTCCTATGCAATTTGTCCATGAAACGACACCGGTTCTGTTAAATGATTGTCGTTTCAGTGATCACGTGGAATTTGATAAAACGCATTCACCTTCATCACCATCACTATCACCATCATCATCAGCTTTATGTGAAGGGGATGATTTTCTCGATGACATTTTGTTCGGTTTAGAGCCTCTCATTGCGCTTTGA 1128 0.4273 MKQQQQHSILCKTTVHESVTKKYITPKRNINARNNTNNKNSIQTELPKMIRVIVTDPDATDTDSSSDEESQFIIPRRRIKQYVNKIEIETVVSTVSRNKKRSAREMKSSRRPAKVAAIPGDERKFRGVRMRPWGKWAAEIRDPVSRVRLWLGTFSTAEEAAKVYDAAAIKFRGKDAVTNFSTSPPVVENVEKAEAVNRTTTMKVDEIKTEISVSGEDSGDEFVNLSSPTSVLRFRPDEINESNKPEEPIFDSEPIEPTELVIEGEPVEPTEPVGECETSFFDETNEIFRQETEDVFNFPTTCDYYYSNMFDEAPMQFVHETTPVLLNDCRFSDHVEFDKTHSPSSPSLSPSSSALCEGDDFLDDILFGLEPLIAL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0903 375 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Psa6g0903 375 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Psa6g0903 375 Gene3D AP2/ERF domain 123 183 IPR036955 GO:0003700|GO:0006355
Psa6g0903 375 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 9 259 - -
Psa6g0903 375 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0903 Psa-Chr6 33933724 33937010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0903 11 333 AP2-EREBP Transcription Factor Family AT4G27950 37.059 4.99e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g0903 AP2 4.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0903 - - lja:Lj0g3v0153129.1 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0903 6 33933724 33937010 Psa6g0903 6 33933724 33937010 ECH