Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0892 ATGGAAACTCAAAATCTCACAATAGATGATACCTTATTATTATCTGATATTTTCAATGAAAAAGAGTTTGCAGGAGAAGATCTCTTCTCCATTTTGGGAAACCTAGAAAACTTGAATGATTTTCCTATCGTTACCAATGAGCAAAACTCCAAAACTTCCTTAACTACTCCACAAGATTCTGAAACTGAACCATCACAGAAATGCAAGAGACAGAAGATTGCTCCGAGTTCAGTTGTCGAGGAACCAAACAGCGACGGACAGCATCGAATTTCGCATATCACCGTCGAGCGAAATCGGAGAAAGCAAATGAATGAGCAGTTGTCGATCTTGAAGTCACTCATGCCTTGCTTTTATGTCAAACGTGGAGATCAAGCATCGATAATCGAAGGTGTAATCGATTACATCAACGAGTTACATCAACTACTACAATGCCTAGAGTCCAAGAAACAAAGAAAAGTTTACAATGAAGTACTAAGTCCAAGACTATTAGTTTCAAGTCCAAGGCCTTCACCACTAATAAGTCCAACAACTCCGCATTCACAACAATGGTTGCAACATTACGGTGCTCATCGATCGTCTGAACCTTCTCCTACTTCTTCAGCTTCTTCCATCAACGACAACATCAACGAGCTTGTCGCGAATTCCACCTCCTCGGTTGCTGATGTTGAGGTTAAGTTTTGTGGCTCACATTTACTTTTGAAAACCGTTTCCTCGCGAATTCCCGGGCAGGTTTTCAGAATAATATCTGCCCTAGAAGATCTTGCACTTGAGATTGTTCATGTTAGTGTTGGTACTTCTGATGAAACCATGTTAAACTCGTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACATATCCAACAAACATTTTGTTAA 897 0.3991 METQNLTIDDTLLLSDIFNEKEFAGEDLFSILGNLENLNDFPIVTNEQNSKTSLTTPQDSETEPSQKCKRQKIAPSSVVEEPNSDGQHRISHITVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIIEGVIDYINELHQLLQCLESKKQRKVYNEVLSPRLLVSSPRPSPLISPTTPHSQQWLQHYGAHRSSEPSPTSSASSINDNINELVANSTSSVADVEVKFCGSHLLLKTVSSRIPGQVFRIISALEDLALEIVHVSVGTSDETMLNSFTIKIGIECQLSAEELAQHIQQTFC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0892 298 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 14 298 - -
Psa6g0892 298 PANTHER TRANSCRIPTION FACTOR FAMA 14 298 IPR044283 GO:0003700|GO:0010052
Psa6g0892 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 138 IPR011598 GO:0046983
Psa6g0892 298 SMART finulus 93 144 IPR011598 GO:0046983
Psa6g0892 298 MobiDBLite consensus disorder prediction 48 87 - -
Psa6g0892 298 MobiDBLite consensus disorder prediction 69 84 - -
Psa6g0892 298 Pfam Helix-loop-helix DNA-binding domain 89 138 IPR011598 GO:0046983
Psa6g0892 298 MobiDBLite consensus disorder prediction 183 202 - -
Psa6g0892 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 155 IPR036638 GO:0046983
Psa6g0892 298 MobiDBLite consensus disorder prediction 48 62 - -
Psa6g0892 298 Gene3D - 80 153 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0892 Psa-Chr6 33102149 33103869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0892 13 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 40.974 1.54e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g0892 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0892 K20558 - gmx:100789392 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0892 6 33102149 33103869 Psa6g0892 6 33102149 33103869 ECH