Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0888 ATGGTTGGTGGTACTAGTAGTAGTATGTCGCTTCCTCCTCCAACAAATCCAAGTGTTAGAAATGTGAGAAATAAGAAAGTTGCCAAAAATGCCCTTGGTCAAAGACAAGATGTGGCATGGGAACATGACACTCTCGTAAATGATGGATCAAGAAAAATCAAGTGCAACTATTGTTATAATGAGTATAACAACCGTGCTTTTCGATTTAAGCATCATTTAGCAGGGACAAATAGTAACGTTGAACCCTTTGTATCTGTTCCAGATGAAGTTCGCAAACAAATATGGACCATTGTTCATAGATTGCAAAGCAAACTCATCAAGAAGAGAACTCTAAGTGAAGATGTATTAGAGGCGAATATGGAAGATGGTAAAAGAAAGAAAGTTGAATCTTCAGATGATGACGATTTGTGGTATGTTGTTGAGGAAGAAAATGCAGGTGGTAATCATGTAAATGTGGCTGATTTAGACGAAGATTTGATGCAAAGTATTGGTGCTAAATTAACTGCACATGTAGATGAATTTGATGTCCTTGAAACTATAGAAAGTGACAATGAAGAAGGAAATGCAGATGAAGGTGATGAAGGAGATGATGATGATGATGATGATGATTATGGTGGAGGAGATGATGATATTAATGAAGATGAAGGAGTTGACATTACAGGGGAAATCCAAACTATCGGCACCTTTGTGATTTGTACTAGCCTCTTTGATTTTGAAGTTAACTGTTGTAGCGGCAAGGATTCCAGATGCGGACGTGACGGCCCAAAAATCAGATTCCCATTCCATTTTAAAGACAGTGAAACAGAAGATGGATGTGGTTATAAAGGCTTTGGTCTTACTTGTTCAGACACACACAAAACACTGCTTGAGCTTCCTTCACATTCTGGCCCAATTGTACTCCAAGTCAAAACCATAAATTATCAAGACCAATATATATTCGTATCTGACCCAGGAAATTGTCTTCCTGGAAAGCTTCTTAAGCTCCACCAATCACAAATGTCTACTTTTCAGTTATATAAGTATCCTGATTATTTTTCTAAATCCATTTTCCTTAATTGTAGCTCATTATCCTGCCCTGTTCATGTTGTTTATTCTGACGATAGCCTCCTTCATTCGGGTTTTGACCCAATACTCTGCACCAGAACTCCAGATATTATTTCTTTACTACACCGGTCGGAAGATGAGGATTGTGATGATTGTTATGGTTTGACATGGTCGAAACCCAATTGTAGCATGTGTGAAATACAAGGAAAGATGTGTAAACTCAAAAACAACGGAACTGGAGACGAGATAGAATGTTTTGAACGTCAACACAAACCAATTAAGAAGACACTTCTATATGTCACAGTTCCGTTCCTTGGTTTGATTTTGGTGACATTGATTCTTGCAACATGTTTGCGTGTTTATAACTATTTTAAAACGAAAGGTGAGGATGAGACTAGAATTGAAAAATTCTTAGAGGGATATAGAGCACTCAATCCTGCAAGATTCTCGTATGCTGATATTAAGAGAGTTACGAATAATTTTAGAGAAAAATTGGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGCAAACTATCTAATGAAATTCTTGTGGCTGTGAAGATGCTTAACAACACAGAGGGCGATGGAAAAGAATTCATTAATGAAGTGAAAGCTATGGGAAAAGTTCATCACATTAATGTGGTTCGCTTGCTTGGATTTTGTGCAGATGGATGCTATCGTGCTCTTGTTTACAATTTCTTTTCAAACGGTTCATTACAAAAATTTATAACCCGACCTGATGACAAGGACCGTTTTCTCGGCTGGGAGAAATTACATCAAATTGCTATGGGCATAGCAAAGGGTATTGAGTATCTTCATATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCGCACAATGTGTTATTAGACGACAAGTTACTTCCCAAAATTACAGATTTTGGTTTGGCTAAATTATGTTCTAAAGATCAAAGCGTTGTTTCAGTAACTGCTGCAAGAGGAACTTTGGGTTACATTGCACCTGAAGTATTTTCGAGAAACTTTGGAAATATATCGTATAAAGCAGACATATATAGTTATGGGATGCTACTATTAGAAATGATTGGAGGAAGAAAGAATATAAGTCAGTTGTCTGAGGAAAATTCCCAAGTTCTATATCCAGAATGGATTCACAATCTCTTTGAAGGGAAAGATATGCAAGTGAAAATTGAGGGAGAAGAAAATGATATAATATTAAAGAAACTTGCAATTATAGGACTATGGTGCATTCAATGGCACGCAATAAACCGCCCATCTATAAAAGTTGTGCTTCGAATGTTAGAGACTTTAGAAGAAGAAAACTTGGTTGTGCCCCCAAATCCTATTAACTCAAATACTTTAAAAGTTGGTGAAATCCCAGTAAAATACTCAACTTTAGAGTTGGAATCTATACATGAGTGA 2451 0.3676 MVGGTSSSMSLPPPTNPSVRNVRNKKVAKNALGQRQDVAWEHDTLVNDGSRKIKCNYCYNEYNNRAFRFKHHLAGTNSNVEPFVSVPDEVRKQIWTIVHRLQSKLIKKRTLSEDVLEANMEDGKRKKVESSDDDDLWYVVEEENAGGNHVNVADLDEDLMQSIGAKLTAHVDEFDVLETIESDNEEGNADEGDEGDDDDDDDDYGGGDDDINEDEGVDITGEIQTIGTFVICTSLFDFEVNCCSGKDSRCGRDGPKIRFPFHFKDSETEDGCGYKGFGLTCSDTHKTLLELPSHSGPIVLQVKTINYQDQYIFVSDPGNCLPGKLLKLHQSQMSTFQLYKYPDYFSKSIFLNCSSLSCPVHVVYSDDSLLHSGFDPILCTRTPDIISLLHRSEDEDCDDCYGLTWSKPNCSMCEIQGKMCKLKNNGTGDEIECFERQHKPIKKTLLYVTVPFLGLILVTLILATCLRVYNYFKTKGEDETRIEKFLEGYRALNPARFSYADIKRVTNNFREKLGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLLGFCADGCYRALVYNFFSNGSLQKFITRPDDKDRFLGWEKLHQIAMGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKLLPKITDFGLAKLCSKDQSVVSVTAARGTLGYIAPEVFSRNFGNISYKADIYSYGMLLLEMIGGRKNISQLSEENSQVLYPEWIHNLFEGKDMQVKIEGEENDIILKKLAIIGLWCIQWHAINRPSIKVVLRMLETLEEENLVVPPNPINSNTLKVGEIPVKYSTLELESIHE* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0888 816 Pfam Protein tyrosine and serine/threonine kinase 509 718 IPR001245 GO:0004672|GO:0006468
Psa6g0888 816 MobiDBLite consensus disorder prediction 180 201 - -
Psa6g0888 816 Pfam Wall-associated receptor kinase galacturonan-binding 245 316 IPR025287 GO:0030247
Psa6g0888 816 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Psa6g0888 816 Gene3D Transferase(Phosphotransferase) domain 1 582 788 - -
Psa6g0888 816 PANTHER RUST RESISTANCE KINASE LR10-RELATED 236 816 IPR045874 GO:0004672
Psa6g0888 816 SUPERFAMILY Protein kinase-like (PK-like) 489 779 IPR011009 -
Psa6g0888 816 PANTHER RECEPTOR-LIKE KINASE 236 816 - -
Psa6g0888 816 Gene3D Phosphorylase Kinase; domain 1 483 581 - -
Psa6g0888 816 ProSiteProfiles Protein kinase domain profile. 507 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0888 Psa-Chr6 32601981 32617958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0888 448 792 Receptor kinase-like Gene Family AT1G66910 42.697 7.96e-92 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g0888 PK_Tyr_Ser-Thr 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0888 - - adu:107468090 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0888 6 32601981 32617958 Psa6g0888 6 32601981 32617958 ECH