Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0887 ATGGTTTCAGTGAGATGTGTGATAATGTTTCTCTTCTTCTTGTTTCTTCTTCTTCTTCCGCAACTAACATATTCCAAGTCGCAGCCTTGTTTATCTTCTTCGTGTGGAAAAATCACAAACATAAGGTATCCATTCAGACTAAAACAAGACCCGGAACACTGTGGCAACAACAGAATCGATCAATTACAATACGAGTTGGATTGTGTGAACAACGTTACGAGATTGAGTTTGTATGACGGTTACTATTTGGTAGAATCGATCAATTACAACAATTACACAATCCGAGTTGTTGACCCTAACATTCATCCCACCGATTGTTCCTCTCTCCCTAGCTTCTTCTTATCACAAAACAACTTTACTTATTTGGATGATCCATACTTGTACCGGTACTTTTCCAAAGAAAGTAATTCATACCAGTACAGCTTAAATCGATCGAAATCGAGGACGTTTATGGGTGATTTTGGTGAATATGAATTATCCATGCCAGTAGTTTACATGAAATGTACAAGTCGACCTAGTAAGGTTGTGGATGAGTATTATGCCGACACGGCTTCATGCTTGGATCAACACTTGACATACGCTATTGTTGGGGACCCACAATTTGCAATTCTGGAGCCTCAATGCCGTGTTAAGTCTATTGCCCTCACATCATTCCTTTGGAATACTGGAGCTTCAGATATTTACTACGGCGACGTTATAGAAAACATTTCATATGTTGATATTCATAAAGCGCTCCGATATGGATTTGAAATTTCATGGATGCAAGCCTCTTGTCCTTGTGATTATTGCTTCCTCAACGACACGATTGGCCAGATTCAATGTATTGTACCCTACTGTCGTTTTGACTCTTGCGGATCTTGGGCAGACAAGGTCCGCCTAATGTTTGATTACGTTGCTGGCATCTACGAAGGACTTCGGGAGCTGACAGGCATGGATAAGATAATCATATATAAGTCAAGTATTAATCTATATAGAGCGGGAACAATTACAGGAAAGTATATTTTGCCATACCTTACATTTAGAACTATATTGGTCATCATACTTTTCTTCGGGTTGATGATCTATACATATCGAAGAAGACATGAATCAATATATGAAAATATTGAAGATTTTCTACAAAGTAATACTCTCATGCCAATAAGGTATTCATACAGAGAGATAAAACAAATGACGAAAAATTTCAAGTTAAAATTGGGTGAAGGAGGTTATGGAGATGTGTATAGAGGAAACTTAATAAGTGGTCCATTTGTAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGAATTCATGAGTGAAGTTGCTACTTTAGGAAGAATATACCATTCAAATGTGGTAAGACTCGTTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTATATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGAGGAAGTTATATCTTTAACTTACAACCAAATATATGAAATATCTCTAGGAGTAGCACGTGGAATTTCTTATCTCCATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATTAAGCCTCATAATATTCTTCTTGATGAAAATTTCATCCCAAAAGTTTCGGACTTTGGTCTTGCAAAGCTCTACCCTATCGACAATAGTATAGCCACTTTGACAGCAGCAAGAGGAACAATCGGGTATATGGCTCCAGAATTGTTCTATCAAAATATTGGAGGAATATCATATAAGGCCGATGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCTAGTAGGAGAAGAAATTTGAATTCGCACGCGGAGCATTCAAGTCAACTATACTTTCCATTTTGGATTTATGATCAATTGGTTAAAAATAGGGAAAGAGAAATGGAAGATTTTGTCATGGAGGAATTTAACGATGTTTTGAAAAAAATGTTCGTCGTTGCACTTTGGTGTATACAGTTGAAACCCGTTGATCGCCCTTCGATGAAAAAAGTAGTGGAGATGCTTGAACAAGATCTTGAAAATATTGAAATGCCTCCAAAGCCTTTATTATATCCACATGAAACAATTCATGAGAATGATGATACCAATTCAAAAGAAACTGAATCAGATACTGCTGGTTCTACCAGTTATGATGAGGAAATCACAACCACTCATTTGTTGAAGTATTCTGCTTGA 2163 0.3675 MVSVRCVIMFLFFLFLLLLPQLTYSKSQPCLSSSCGKITNIRYPFRLKQDPEHCGNNRIDQLQYELDCVNNVTRLSLYDGYYLVESINYNNYTIRVVDPNIHPTDCSSLPSFFLSQNNFTYLDDPYLYRYFSKESNSYQYSLNRSKSRTFMGDFGEYELSMPVVYMKCTSRPSKVVDEYYADTASCLDQHLTYAIVGDPQFAILEPQCRVKSIALTSFLWNTGASDIYYGDVIENISYVDIHKALRYGFEISWMQASCPCDYCFLNDTIGQIQCIVPYCRFDSCGSWADKVRLMFDYVAGIYEGLRELTGMDKIIIYKSSINLYRAGTITGKYILPYLTFRTILVIILFFGLMIYTYRRRHESIYENIEDFLQSNTLMPIRYSYREIKQMTKNFKLKLGEGGYGDVYRGNLISGPFVAIKMLKIKSKTNGQEFMSEVATLGRIYHSNVVRLVGFCVEGSKRALVYEYMPNGSLDKYIFNKEEVISLTYNQIYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIATLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEMASRRRNLNSHAEHSSQLYFPFWIYDQLVKNREREMEDFVMEEFNDVLKKMFVVALWCIQLKPVDRPSMKKVVEMLEQDLENIEMPPKPLLYPHETIHENDDTNSKETESDTAGSTSYDEEITTTHLLKYSA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0887 720 SMART serkin_6 392 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0887 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Psa6g0887 720 Gene3D Transferase(Phosphotransferase) domain 1 468 674 - -
Psa6g0887 720 Pfam Wall-associated receptor kinase galacturonan-binding 30 98 IPR025287 GO:0030247
Psa6g0887 720 SUPERFAMILY Protein kinase-like (PK-like) 376 665 IPR011009 -
Psa6g0887 720 Pfam Protein kinase domain 396 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0887 720 CDD STKc_IRAK 398 666 - -
Psa6g0887 720 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Psa6g0887 720 ProSiteProfiles Protein kinase domain profile. 392 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0887 720 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 12 694 - -
Psa6g0887 720 Gene3D Phosphorylase Kinase; domain 1 367 467 - -
Psa6g0887 720 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 694 IPR045874 GO:0004672
Psa6g0887 720 MobiDBLite consensus disorder prediction 686 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0887 Psa-Chr6 32590698 32595350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0887 332 698 Receptor kinase-like Gene Family AT4G18250 43.947 4.01e-102 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g0887 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0887 - - cam:101508554 946.421