Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0873 ATGAGAGTTTCACCACAAAATTCAGAAACCGAGAGCACCTCAAATTCATCACCATCAACAACAAACTCAATCCAAGACCAAGGCTCCAACAGTAACAACCTTAAACGCAACCGTGACTCCAACAAACACCCCGTCTACCGGGGCGTTCGCATGAGAAACTGGGGAAAGTGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCGCGGATTTGGCTCGGCACTTTCCCCACAGCCGAAATGGCCGCCAGAGCCCACGACGCTGCAGCTCTCTGCGTTAAAGGAAAATCCGCCATTCTCAATTTTCCTCACCTCGCAGATTCTCTTCCCAAACCAGCTTCTTTAGCCCCGCGCGACGTTCAGGCCGCGGCGGCTAAAGCAGCCCAAATGACCAATAATTTGGAACCACAATCGTCATCTTCTTCACTCTCATCACCGTTGTCGTCTTCGTTGACGACAACGATGTCGTCATCGTCGTCGACAAGTCTGCTCGCAGACTTGTCGACGACATCTGACGAACTCAGTGAAATAATCGAACTGCCTACTTTGGAAAACAATTATGATAATGTTGGGAAAGAGGAGTTTCTCTTGGACTATACATGGATGTATCAACAACCAATAACATGGCTACAAACACCACAAGAAAACGGTTGTTCTGGTGGTGGTGGCGAATACGATGATGGATTTGGTAACAATAATGGTGTTATTAAGAAATCAGAAGCTATGTGA 726 0.478 MRVSPQNSETESTSNSSPSTTNSIQDQGSNSNNLKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKSAILNFPHLADSLPKPASLAPRDVQAAAAKAAQMTNNLEPQSSSSSLSSPLSSSLTTTMSSSSSTSLLADLSTTSDELSEIIELPTLENNYDNVGKEEFLLDYTWMYQQPITWLQTPQENGCSGGGGEYDDGFGNNNGVIKKSEAM* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0873 241 MobiDBLite consensus disorder prediction 1 35 - -
Psa6g0873 241 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Psa6g0873 241 MobiDBLite consensus disorder prediction 125 150 - -
Psa6g0873 241 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Psa6g0873 241 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Psa6g0873 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 211 - -
Psa6g0873 241 MobiDBLite consensus disorder prediction 1 47 - -
Psa6g0873 241 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Psa6g0873 241 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Psa6g0873 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 211 - -
Psa6g0873 241 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Psa6g0873 241 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Psa6g0873 241 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0873 Psa-Chr6 30967196 30968373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0873 7 228 AP2-EREBP Transcription Factor Family AT5G11590 53.744 1.93e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g0873 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0873 K09286 - gmx:100305349 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0873 6 30967196 30968373 Psa6g0873 6 30967196 30968373 ECH