Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0865 ATGGAAAAGGTTGTTGGAGGAAAGTATAAAATTGGTCGCAAAATTGGGAGTGGATCATTCGGTGAAATTTATATTGGGGCACATGTTGTGACTTCTGAGCTTGTGGCCATTAAGAAGGAGAACAAGAAAACTAAACAACCACAGCTACTATATGAGGCAAAGTTGTATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACTGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTCGAAGACCTTCTTTACTATTGTGAGGGGAAGTTTTCGCTTAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATCGAGTATTTACATTCCAAGGGACTTTTGCATAGAGATATCAAACCAGATAACTTCCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTGTATGATTGATTTTGGACTTTCCAAAGGATATAGAGATCCTATCAGTTACAAGCACATTCCATACAGAGAGAACAAAAACTTAACAGGAACTGCACGTTACGCAAGTTGCAATACTCATAAAGGAATTGAACAAAGTCGCAGAGATGATTTGGAGTCTCTTGGTTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGCAAGCTACCACGAGAACGCAAAAATATGAAAAGATTTGTAAAACGAAGTTATCAATTCGCACCGAGGTACTTTGTAAGTCGTATCCTGTGGAGTTCGCTTCTTACTTTCATTATTGCCGTTCCTTGACGTTTGATCAACGACCAGATTATGGATATTTGAGACGCCTGTTTCGTGAATTGTTCACTTCTAAAGGATATGATGCTGACTATTTATTCGACTGGACGATTCTAAAATATCAGGAGATACAACAAATAAAGGAACAAAATGAATCCATTGCTCCAGTTGCTTTACCTACAATTATTGAGCCGGTGGATGCGGACGAGCATATAGAAGTCAATGATTGTACTCAAACTTCTGCGGCAAAACTACCAATCTATTCCGATCGTCCACGTGTTTGTATGAACCTCAGAGTAGCTAATATTGAGAGTCTTGATGATGAGATTGAAACAGAGAAACATAATGTGAATACTGGTTTACCTATTTCAACTGTCACGCCTCTAGTTTCTACCGAAAATGTTCCAAAACCAGAAAGGACTGTAGAAGCCTCAAATCCGGACGGTGTGTTAGGGAGTAAATGTGGTGCTTCGGGTGATATTGTTCCTTCACTTCGCCGAGTTTCATCCATCAATTAG 1281 0.3934 MEKVVGGKYKIGRKIGSGSFGEIYIGAHVVTSELVAIKKENKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLEDLLYYCEGKFSLKSVLMLADQMLTRIEYLHSKGLLHRDIKPDNFLMGLGKKANQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQATTRTQKYEKICKTKLSIRTEVLCKSYPVEFASYFHYCRSLTFDQRPDYGYLRRLFRELFTSKGYDADYLFDWTILKYQEIQQIKEQNESIAPVALPTIIEPVDADEHIEVNDCTQTSAAKLPIYSDRPRVCMNLRVANIESLDDEIETEKHNVNTGLPISTVTPLVSTENVPKPERTVEASNPDGVLGSKCGASGDIVPSLRRVSSIN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0865 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa6g0865 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Psa6g0865 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0865 426 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Psa6g0865 426 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 403 - -
Psa6g0865 426 PANTHER CASEIN KINASE-RELATED 1 403 - -
Psa6g0865 426 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0865 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Psa6g0865 426 Pfam Protein kinase domain 9 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0865 Psa-Chr6 30639005 30643143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0865 8 228 MAP Kinase Kinase Kinase AT1G54960 28.390 6.42e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa6g0865 Pkinase 3.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0865 K08960 - gmx:100782913 598.586