Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0862 ATGGAGGGAACAAACAACATTTTCCAAACCAACTTTTGCCCACAAATGCCCTCTGACAATAACAATGCCGAGACTAATAATAACACTGCCACTGCTGCGGCAGACCAATTCGTCGTTGAGGACCTCCTTAACCTCTCGTTCGACGATGCTGACATCATTTCTGATGCCAGCATCCTCGACTCCGCCACTGGGAACTCATCAACCTCCTCTTCCACCATAGCCGCTGTCGTGAATAGCTGCAACTCCTCGTCATTTTCCGGGTTTGACACCAATCTTATTCCTGATAATGGCTGGCAGAATAATATCTCTGACTGCCATTTCTCCGGAGACCTTTGTGTTCCGGAGGATGATTTAACAGACGCGGGTTGGCTTACCAATATCGTGGATGATTCGTTTTCGGGCGAGGAACTTGAAAAGATGCAACTGATATCAGGTATGAAAGTGCAAAACAAGGACGGAGAGGCCCGCGAGGCTTCCCAGCTCAGCCGAAACAGCCCAATATTCGATACTGAAGTGTCAGTTCCAGCTAAGGCCCGTAGCAAGAGGACACGTCAGCCCCCTTGCGACTGGACCTCGCGTCTTCTTCTTGTTTCTGAAGCGGCCTCGTCTTCTTATGAGCCCGAACTCCTTATTCCAACCCCAACCCTACCCTGTGTCACAGTTCCAAAGAAGCAGGCAAAGATTGCTCCGAGAAGAAAGGACAACTGTGACGGAGGGTCTGGCGGGGATGGTCGCAGATGTCTGCATTGTGCCACGGACAAAACGCCCCAATGGCGAACTGGGCCTAAAGGCCCAAAGACTTTATGCAATGCGTGTGGCGTAAGATATAAGTCGGGTCGGTTGGTGCCCGAATACAGACCTGCAGCAAGCCCAACATTTGTGATGACCAAACACTCTAACTCGCATCGTAAAGTGTTGGAACTAAGGAGACAGAAGGAAATGCTGCAGACACATCCACACCAACATAATCAATTCTTACAACATCAGAATATGATGTTTGATATGACGCCCAATGCTGATGATTATTTGATTCACCAACATGTCGGGCCAGATTTTAGACACCTGCTTTAA 1071 0.4893 MEGTNNIFQTNFCPQMPSDNNNAETNNNTATAAADQFVVEDLLNLSFDDADIISDASILDSATGNSSTSSSTIAAVVNSCNSSSFSGFDTNLIPDNGWQNNISDCHFSGDLCVPEDDLTDAGWLTNIVDDSFSGEELEKMQLISGMKVQNKDGEAREASQLSRNSPIFDTEVSVPAKARSKRTRQPPCDWTSRLLLVSEAASSSYEPELLIPTPTLPCVTVPKKQAKIAPRRKDNCDGGSGGDGRRCLHCATDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMTKHSNSHRKVLELRRQKEMLQTHPHQHNQFLQHQNMMFDMTPNADDYLIHQHVGPDFRHLL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0862 356 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
Psa6g0862 356 CDD ZnF_GATA 249 293 IPR000679 GO:0006355|GO:0043565
Psa6g0862 356 Gene3D - 241 318 IPR013088 GO:0006355|GO:0008270
Psa6g0862 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 305 - -
Psa6g0862 356 PIRSF Txn_fac_GATA_plant 20 336 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa6g0862 356 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Psa6g0862 356 PANTHER GATA TRANSCRIPTION FACTOR 1 356 - -
Psa6g0862 356 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Psa6g0862 356 PANTHER GATA TRANSCRIPTION FACTOR 1 356 - -
Psa6g0862 356 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0862 Psa-Chr6 30339002 30341897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0862 107 356 C2C2-Gata Transcription Factor Family AT5G25830 55.472 6.37e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa6g0862 GATA 1.6e-15 CL0167