Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0861 ATGAAAAACCAAGCTCAATTTTCTTGTTCATATGCACAAAAACTAGCATCAATATTTGCTTCAATCCTTCTCCTTTTCCATGAAAAGTCTTTAGCAAAACATCATCAACCATGTCCAATATCATCATGCGGCAAAATCAAAAACATAACCTATCCATTCCGTCTCAAAACCGATCCAAACCACTGCGGTGACACAAGGTACGAGTTAGATTGCGACGAAAACGGTGCATCATTGACTATGTTTTCAGGTAAATACTATGTTCAACACATCGATTACAAGAGATTTAAAATTTCATTAAGTGACGCGGGCGCAGTGGAAGACACTAACTGCTCTTTCATCCCACGGTACTTTTTATATGATCGAAGTTTCAATAATGTCCTTTTTGGTGAAGAAGATTTTGGATCTGAGCCGTTTGTTTTGGATCCGATAAATCCAACGAGGATCGCGTATTTCAGTTGTTCTAACCCGATAAATGATCCACGGTATGTTAACGTGGACACGAGTCATTGTAACATAAAGGGAAATAGTCATGTGTATGCAGTTTTGGAACCATCTTTGTTTGAGTATAGTGTTGAGGACATTAAGGTTGGGTGTGATTTTATGGTGGCTACTTTGGCTAAGGAACGGTCGGAGAATACGAAAGAGAAGGTTTCTTATGATGAGATTCGTGGCATGATAATCGATGGCGTTGAGGTTTCATGGTTGCCTGTGATTTGTGAAAGTCGATGTGGAAAAGGAACAAGTTGTAAGGTTGTTGATGAAAAAAGTGGAGAAGTTCAATGTGATAAGCGCTTCTGTCATTATGCATACCAAACAACGGATAAGTGCGAACTTCAGCATCAGATATTCGGTTATACTCGAGCATATCTTAGAGGCATTTTTATTGGACTTGGAAGTAGAATCACATTTAGCACAAGACAATTGGACAACCCGGTTGGACTAGAATATTTTGATGGAGGAATATTCATAGGAAGAAATGTGATACCATTATTCATAGCAGCCAGAATTGTCTTTGGAGTTATTCTTCTACTTGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGTTAGAGAGCAATCTAAATCCGATTCGGTATGAATACAAAGAAATCAAGAAGATGACCGGAGGTTTAAGACTGAAATTAGGTCAAGGAGGTTTCGGCGCGGTATATAAAGGAAAGCTAAGAAGTGGACCCGATGTTGCGATAAAGATGTTGACGAAATTCAGTGTTAATAATGGACAGGATTTTATTAACGAAGTTGCGACTATCGGAAGAATACATCATGTTAATGTAGTACGTCTGGTTGGATATTGTGTTGAAGGAAAAAAGAGTGCATTAATATACGAATTCATGCCGAATGGATCGTTGGATAAGTATATTTTTCCTAAAGAAGGAATTGTTCCTTTGAGTTACGAGAAAATATATGAAATATCTCTTGGAATAGCCCGGGGGATAGCGTATTTGCATCAAGGTTGTGATATGCAAATTCTTCATTTTGATATCAAGCCTCATAATATTCTTCTAGATGAAGATTTTGTTCCGAAGGTTTCGGATTTTGGACTTGCAAAACTTTATCCTGCGAACGATAGCATTGTCCCGTTAACGGCTGCAAGAGGAACATTAGGTTACATGGCTCCTGAATTGTTCTACAAAAATATAGGTGGAGTGTCTTACAAGGCAGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGCGGGTAAGAGGAAGAATTCCAACCCTAACGCAGAACGTTCGAGTCAACATTACTTTCCGTTTTGGATTTACGATCAATTTAAACAAGAGAAAGATATTGACATAATGGAAAATGTCTCAGAAGAGGGAGTGACCGTAGCGAAAAAGATGTTCATGGTTGCACTTTGGTGTATTCAGTTGAAACCGAGTGATCGTCCTTCAATGAATAAAGTAGTAGAGATGCTTGAAGGAAAAACCGAAAGCCTTGAATTGCCTCCGAGGCCTTCTTTTTATCCAAATGAAAATTATAAACATCATGATGAAATGAACTCTGACCAAACATCATGGAGTGATTCCTCTAGTATTGGCCAAACCTCAAATAATTACTCATTGGACAATGACTCTTGA 2136 0.3787 MKNQAQFSCSYAQKLASIFASILLLFHEKSLAKHHQPCPISSCGKIKNITYPFRLKTDPNHCGDTRYELDCDENGASLTMFSGKYYVQHIDYKRFKISLSDAGAVEDTNCSFIPRYFLYDRSFNNVLFGEEDFGSEPFVLDPINPTRIAYFSCSNPINDPRYVNVDTSHCNIKGNSHVYAVLEPSLFEYSVEDIKVGCDFMVATLAKERSENTKEKVSYDEIRGMIIDGVEVSWLPVICESRCGKGTSCKVVDEKSGEVQCDKRFCHYAYQTTDKCELQHQIFGYTRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGIFIGRNVIPLFIAARIVFGVILLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGLRLKLGQGGFGAVYKGKLRSGPDVAIKMLTKFSVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALIYEFMPNGSLDKYIFPKEGIVPLSYEKIYEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPANDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNSNPNAERSSQHYFPFWIYDQFKQEKDIDIMENVSEEGVTVAKKMFMVALWCIQLKPSDRPSMNKVVEMLEGKTESLELPPRPSFYPNENYKHHDEMNSDQTSWSDSSSIGQTSNNYSLDNDS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0861 711 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Psa6g0861 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Psa6g0861 711 SMART serkin_6 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0861 711 Gene3D Transferase(Phosphotransferase) domain 1 462 667 - -
Psa6g0861 711 ProSiteProfiles Protein kinase domain profile. 386 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0861 711 CDD STKc_IRAK 392 660 - -
Psa6g0861 711 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Psa6g0861 711 Pfam Protein kinase domain 391 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0861 711 SUPERFAMILY Protein kinase-like (PK-like) 378 691 IPR011009 -
Psa6g0861 711 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 691 IPR045874 GO:0004672
Psa6g0861 711 MobiDBLite consensus disorder prediction 689 711 - -
Psa6g0861 711 MobiDBLite consensus disorder prediction 666 711 - -
Psa6g0861 711 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 691 - -
Psa6g0861 711 Gene3D Phosphorylase Kinase; domain 1 369 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0861 Psa-Chr6 30305232 30308671 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0861 30 674 Receptor kinase-like Gene Family AT5G38260 34.862 3.79e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g0861 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0861 - - gmx:100820366 1007.67