Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0860 ATGAAACCAAACACAAATCTCACACTATTATTATTCACAACTTTCTTGGTTACAATATTTGCATCATCCTTACCCGGTTGCAAAAACACATGCGGAGACATAACGGTTCCATTTCCATTTGGTATATCCACATCATCAATACCAAATCAAGGACCATGTTTTCTAGAACCAAAATTCAATCTCACATGTGAAAACAACACAAACTTAATATGGGGTGATGTTCATGTCTTAAACATAAGCATCCTCCAAGGCCAACTCGAACTCCTGTGTTTTGTCTCAAGTTATTGTGACAGCAAAAACAACAACCAACCAACTTTAGACACTGCCAGTTTCAGCATATCAAGAAAAGAAAACAAGTTCATAACTATCGGTTGCGACAATTACGGTTTTATCGACAGCAATTACGACCAAGAAACATACACGACGGGCTGCTTAACAAGATGTAACGGTAACCGAAGGCGGATCGAGAACGGAACGTGTTCCGGTATTGGTTGTTGTCAAGTTGACATTCCACCTATGATGAGGAATATAAGTGTTAACGTTTTCGAGTTTACTAATTCGACGGAATCATTTGGATGTAGCCATTCGTTTGTGGTTAAGAATGGGTTTTATAATTTTTCTGTTTCTGATTTGGATAATTTTTCTCATGAGAAGCTTCCTTTGATACTCGATTGGAGTGTTGGGAGTGAAAACTGTAAGGCTTCAAAAGGTGAAGATGGTTATGCTTGCAAGGCGAATAGTTATTGTGATGATAAGGATATTGATTTTGGTTATCAATGTAAATGTAAAAACGGTTACGAAGGAAATCCTTATCATCCAGATGGTTGCAAAGACATTGACGAATGTAAGACTTCGAATAACACATGTATAAGTGATGAACATTGTCGCAACGAAGATGGATTTTACGAATGTTTTTGTCCACATGGACAATCGGGAAATGGAACATTGGAAGGAGGGTGTCATAGACGCGATGTAATTACCAAGGTTGCCATCGGAGCAAGTGGTGGATTAATTGTCCTATTTGTGGCGATTTCTTCTCTATACTTGACATGCCAAAAAAGAAAACTAATCAAACTGAAACAGAAGTTCTTTCAACAAAATGGTGGCTTCATTTTGCAACAACAACTCTCCACAAGGGAAGATGCATCTCAATCAGCTCAAATATTCACAGAACAAGAGCTAAAAAAAGCCACCAACAATTACGACGAAAGCTTAATCATTGGCAGAGGAGGTTATGGTACAGTCTTCAAAGGAATTTTGTCCGACAACAAAATCGTTGCTGTCAAAAAGTCCAAAATAATAGACGAGAATCAAATCGAGCAATTCATTAACGAGGTAGTTGTTCTGTCTCAAATAAATCATAGGAATGTCGTTAAACTCTTAGGATGTTGTTTGGAAACAGAAGTTCCTTCCTTAGTTTATGAATTCGTTAGCAACGGTACACTTTTCGATTTCATGCATAGTACTAAAGGTAAAGAAAATAATCCAACATGGAAAACACGATTAAGAATCGCAGCCGAAACAGCAGGAGCTTTATCGCCTGAGGAGAAAATTAGTCTTGCTATGCATTTTTTGTCTTGTTTGAAACAAGATAGAATTTCCGAAGCTATTGAAGTTGGAGTTATGAATGATGATAACAAGAAGGAGATTATGGAGGTTGCTATTCTTGCAGCAAGGTGTTTGAGGCTTAGAGGAGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAATGGAGAAGCATCCATGGAATGATACAGATCAAAATTTTGAGGAGAGTCAACGGTTACTTCATGAGGCATCTTGTAGCATTTATAATGAAGGTGAAAATGGTGATAGCTATAATCTTGGTTATACTGTTGGGTTTGATAGCTTGAAGGATCAACCATTGATTGCATTGGATGATGGAAGATGA 1932 0.3773 MKPNTNLTLLLFTTFLVTIFASSLPGCKNTCGDITVPFPFGISTSSIPNQGPCFLEPKFNLTCENNTNLIWGDVHVLNISILQGQLELLCFVSSYCDSKNNNQPTLDTASFSISRKENKFITIGCDNYGFIDSNYDQETYTTGCLTRCNGNRRRIENGTCSGIGCCQVDIPPMMRNISVNVFEFTNSTESFGCSHSFVVKNGFYNFSVSDLDNFSHEKLPLILDWSVGSENCKASKGEDGYACKANSYCDDKDIDFGYQCKCKNGYEGNPYHPDGCKDIDECKTSNNTCISDEHCRNEDGFYECFCPHGQSGNGTLEGGCHRRDVITKVAIGASGGLIVLFVAISSLYLTCQKRKLIKLKQKFFQQNGGFILQQQLSTREDASQSAQIFTEQELKKATNNYDESLIIGRGGYGTVFKGILSDNKIVAVKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFMHSTKGKENNPTWKTRLRIAAETAGALSPEEKISLAMHFLSCLKQDRISEAIEVGVMNDDNKKEIMEVAILAARCLRLRGDERPSMKEVAMELDGIRLMEKHPWNDTDQNFEESQRLLHEASCSIYNEGENGDSYNLGYTVGFDSLKDQPLIALDDGR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0860 643 ProSiteProfiles Protein kinase domain profile. 401 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0860 643 SUPERFAMILY EGF/Laminin 278 313 - -
Psa6g0860 643 SMART egfca_6 278 321 IPR001881 GO:0005509
Psa6g0860 643 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524
Psa6g0860 643 Gene3D Laminin 229 318 - -
Psa6g0860 643 SUPERFAMILY Protein kinase-like (PK-like) 382 512 IPR011009 -
Psa6g0860 643 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 295 306 IPR000152 -
Psa6g0860 643 Gene3D Transferase(Phosphotransferase) domain 1 514 605 - -
Psa6g0860 643 ProSitePatterns Calcium-binding EGF-like domain signature. 278 304 IPR018097 GO:0005509
Psa6g0860 643 Gene3D Transferase(Phosphotransferase) domain 1 378 513 - -
Psa6g0860 643 Pfam Protein tyrosine and serine/threonine kinase 407 512 IPR001245 GO:0004672|GO:0006468
Psa6g0860 643 CDD EGF_CA 278 312 - -
Psa6g0860 643 Pfam Wall-associated receptor kinase galacturonan-binding 27 84 IPR025287 GO:0030247
Psa6g0860 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 515 608 - -
Psa6g0860 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 23 513 - -
Psa6g0860 643 Pfam Calcium-binding EGF domain 278 320 IPR001881 GO:0005509
Psa6g0860 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 515 608 IPR045274 GO:0007166
Psa6g0860 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 513 IPR045274 GO:0007166
Psa6g0860 643 Pfam Wall-associated kinase 158 264 IPR013695 GO:0004674|GO:0016021
Psa6g0860 643 ProSiteProfiles EGF-like domain profile. 278 316 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0860 Psa-Chr6 30299142 30301633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0860 514 643 Receptor kinase-like Gene Family AT1G21230 37.405 3.40e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa6g0860 PK_Tyr_Ser-Thr 4.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0860 - - gmx:100781051 658.677