Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0858 ATGTGTAGAAAAAAATCACTCTTATGTTTCCTCCAAATATTCATGCTAGTTGCTGTGATACTACTTCATCATCAAACATGTGATGCAACAATTACTAATAACCAAACATCCTGCCCACCTTCCTCATGCGGCAAAATCAAAAACATAAAACATCCTTTTCGACTTCAGAATGACCCAGCAACCTGCGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATCACAACCTTAACTTTGTTTTCCGGTAAATACCATGTGAAATCAATCGACTACAAAAACTACACAGTTCGGTTAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCCTCTATTCCTCGCTATTACTTTTACACTTCTAATTTCACAAGTTATTACAATTATGGCTACCAGGAGGATCCATATCAAGTTTCCCAACCAAGAATAATTTCTGGAGATGATATTTATCTTGATACTGTATCATTACCAATGTTCCAGCACGTAATTTACATGAATTGTAGAAATCCTGTACGGGATGATCCAGTGTATTCGGATACAGTTTCTTGCATCAGGTCACAGTCTTCTCAAGGTGGTTATGTTTACGCAGTTGCTGGGGATTTGAAGGTTAGCAACTTCAAATATGATGACTGTCATGTGGAGTTTGTTACTGCTATCTCTTTTTTCGGCTATAATAATAGTGGAGCCGGTGGATGGGACATTCCGAATCGAAAGTATTCGTACAATGAAATTCATGAGATGTTGGTGGGTGGATTTGAGGTTTCTTGGATGAATTTTGCTTGTGAAAATGTTTGTGGAGATCCATTTTGCTATTTGAGTGAAACCACTTGGAGTATTGAATGCAACGATCCGGCTGATCCATGTGTAACCACGTTGGGATTTCATGTTGCTTGTGACAAAGGACCTCCATCAAAGCTTCGAATGTTTGTAGAAGGTATTCTATATGGCATTGCTCGAGGACTACTACATGCAATAGGTGTTAGAATATACGATGGGGATGAAGGAATTCCTGAATCCGAACTTGGTATTGAAATAGGAAAAATCATTGGAAGGTATATTTTGTCTTCATATATTATCATTAGATTTATGTTAGGTATCATGGTTTTTTTTATCAAAATGATACACACATATCGAACAAGACATGCATCAATATATGAAAACATTGAAGATTTTCTTCAAGGGAATCCCCTCGTGCCAATAAGGTACTCATACAAAGAGATAAAGAATATGACTCAAAATTTTAAGGACAAGTTGGGAGAAGGAGGCTATGGCAAGGTTTATAAGGGAAGACTACGCAGTGGACCTTTAGTAGCTATAAAGATGTTGGGAAAATCTAAGGGTAATGGAAATGGACAAGATTTCATTAGTGAAGTTGCGACCATAGGAAGAATACATCACACAAATGTGGTGCGACTTATTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTGTTTATGATTTCATGCCTAATGGCTCGCTTGATAAATACATTTCATCTAGAGAAGATCATGTTTCCTTAACATATAAGCAAATGTACGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAGGGTTGTGACATGCAAATTTTACACTTTGATATTAAGCCACATAACATACTTCTTGACAACGATTTTATCGCCAAGGTTTCGGACTTTGGTCTTGCAAAACTTTACCCGATTGACAATAGCATTGTAACCCTAACTGCAGCTAGAGGAACAATTGGTTACATGGCTCCAGAACTGTTCTACAAAAATATTGGCGGAGTTTCCTATAAGGCCGATGTGTACAGCTTTGGAATGTTATTAATGGAAATAGCGAACAAGAGAAGAAATTTGAACTCAAATGCTGATGATTCGAGCCAAATTTTCTTCCCCTATTGGATTTACAATGAATTAGTTGAAGAAAGGGAGATAGAAATATTGGGAGAAGCTACCAATGAGGAAAAGAAAAATGTGAAAAAGATGTTCATAATTGCTCTTTGGTGTATACAATTGAATCCTAGTGATCGTCCTTCAATGGACAGAGTAATAGATATGCTCGAAGGAGATATTAAAGACATTAAAATTCCTCCAAAATATGATGCATATCCAATTGAAATGATTCAAGATGATGTAACTAGCTTTAGTGAATCCATAGAAGATCCTTTACTTTAG 2166 0.3712 MCRKKSLLCFLQIFMLVAVILLHHQTCDATITNNQTSCPPSSCGKIKNIKHPFRLQNDPATCGDPRYELSCENNITTLTLFSGKYHVKSIDYKNYTVRLVDPGIEEGDCSSIPRYYFYTSNFTSYYNYGYQEDPYQVSQPRIISGDDIYLDTVSLPMFQHVIYMNCRNPVRDDPVYSDTVSCIRSQSSQGGYVYAVAGDLKVSNFKYDDCHVEFVTAISFFGYNNSGAGGWDIPNRKYSYNEIHEMLVGGFEVSWMNFACENVCGDPFCYLSETTWSIECNDPADPCVTTLGFHVACDKGPPSKLRMFVEGILYGIARGLLHAIGVRIYDGDEGIPESELGIEIGKIIGRYILSSYIIIRFMLGIMVFFIKMIHTYRTRHASIYENIEDFLQGNPLVPIRYSYKEIKNMTQNFKDKLGEGGYGKVYKGRLRSGPLVAIKMLGKSKGNGNGQDFISEVATIGRIHHTNVVRLIGFCVEGSKRALVYDFMPNGSLDKYISSREDHVSLTYKQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDNDFIAKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANKRRNLNSNADDSSQIFFPYWIYNELVEEREIEILGEATNEEKKNVKKMFIIALWCIQLNPSDRPSMDRVIDMLEGDIKDIKIPPKYDAYPIEMIQDDVTSFSESIEDPLL* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0858 721 ProSiteProfiles Protein kinase domain profile. 411 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0858 721 Gene3D Transferase(Phosphotransferase) domain 1 488 700 - -
Psa6g0858 721 SUPERFAMILY Protein kinase-like (PK-like) 396 685 IPR011009 -
Psa6g0858 721 ProSitePatterns Protein kinases ATP-binding region signature. 417 439 IPR017441 GO:0005524
Psa6g0858 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Psa6g0858 721 SMART serkin_6 411 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0858 721 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Psa6g0858 721 Pfam Protein kinase domain 414 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0858 721 CDD STKc_IRAK 417 686 - -
Psa6g0858 721 Gene3D Phosphorylase Kinase; domain 1 393 487 - -
Psa6g0858 721 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 706 IPR045874 GO:0004672
Psa6g0858 721 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 13 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0858 Psa-Chr6 30273936 30289816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0858 363 696 Receptor kinase-like Gene Family AT4G18250 45.906 6.17e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa6g0858 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0858 - - mtr:MTR_1g027050 1112.83