Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0855 ATGGATAGAGAATGGGGTTCAAAACCGGGAAGCGGCGGAGCCGCGACGGCGCAAAACGAAGCAATAGACCGCCGCGAGCGCAACTACCTCGCACATACTCAAGGCAAATACGCATCAAAACCAATCTTCGCTAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCCACTCAACCTCAACCTCATAAGCGGAAGCTTAACCTTAAGAAAACTGTTAAAATTGGTCGTCCTGGGTACCGTGTAACTAAACAATTTGATCCTGACACTAAGCAAAGATCACTCCTTTTTCAGATTGAATATCCTGAGATTGAAGACCTTGCAAAGCCTAGGCATCGATTCATGTCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTCTTGTTTGCAGCTGAACCATATGAAACAATTTCTTTCAAGGTCCCTAGCACAGAGATTGACAAGTCCACGCCAAAGTTTTTCTCGCATTGGGACCCAGATTCCAAGATGTTTACAGTCGCATCATTTTCTGAAGTGCTATGGGGAAGAGTTAGGGGGATTTCCGGTGGGAGCATTTTCAATGAAAGTTGCCATTGGGTTGAAATATCGGATATTGGTGAAATGATGATTCCCAATGAGGATTTTGTGATTCAAATGGTTAACTCTATAATATTGAATATCCTGAGATTGAAGACCTTGCAAAGCCTAGGCATAGATTTATGTCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTCTTGTTTGCAGCTGAACCATATGAAACAATTTCTTTCAAGGTCCCTAGCACAGAGATTCACAAGTCCACGCCAAAGTTTTTCTCGCATTGGGACCCAGATTCCAAGATGTTTACGCTGCAGTTGTATTTTAAAATCAAACCACCAGAGATCAATGCCTCCACCACCTCCTATGTCTGCAAATGGTCCCAGACCTGTACCCGGTGCAATGCCACCTCTTCCACCTCCAGCTCCCCTTGGCGCTCGACCTCCATCAATGCCACCTCCGCAAGGACTCAAAAGCAACAGCACTAAACTTCTTCGAAACACTTTTCTCGCTCTTACTGAATGTGTTGTTGCACAAGGACTAGGACTTGCACTTGGTGCTGCTGTACTTGATCAAAAATCAGCAACAAACACTTGCATCGGTGTGGATTCTATGTTCAGAATGTTCCAAAATAGGCAATCTGAGAGGAATTCTTTGTACAAAGAATATGCTGAGAAACTTCTTCAATCCGGTCAAGTTTATGGTTGCTTTTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAATTGCCTCCGGTATACACAGTGTCTTTGAAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCAGTTTATAACTTTTGTGTGACTGTTGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCGAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGAATTTCCCATGCCTAATTTTGCACACGTTTCCTTGATTTTAGCTCCTGATAGAAGTAAATTATCAAAACGACATGGAGCAACATCTTTCGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCGATGACGAATTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTCTTCACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAATAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGATGGATGAATGGTCAACATTTAAGAGCACGTCCATCAGAGGACTTGAACAAACTTATCGCAGAGCGCTGGAAGACATCTGGCATGCTAACAATATCAGAAGGGCCCTTTGTTGATGATTCAATTCAACTACTTAAGGATGGAATTGACTTGATAACTGATGCAGACACTGCACTTTCGAATTTGCTTTCTTATCCTCTACATTCTACTTTACAAAGCCATGAAGCAGAATCTGTCATACAAGATAATCTTTCCGAGTTTTGTGCCAGTTTCTTGGCTGCCTACGATAGCGGTGATCTGTTACGTGCGCTCGAAGAAGGCCAAGCTGGCTGGAAAAATTGGCTCAAAGGCTTCGGCAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCCCTTCGGCTTCTGCTGACTGGAAAACTTCACGGTCCAGATATCGGAGCTACTGTTGTATTGCTTTATAAAGCTGGTGCCCCTTCGGCTTCTGCTGACTGGAAAACTTCACGGTCCAGATATCGGAGCTACTGTTGTATTGCTTTATAA 2334 0.4297 MDREWGSKPGSGGAATAQNEAIDRRERNYLAHTQGKYASKPIFAKRAAREAKDAPTQPQPHKRKLNLKKTVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTVASFSEVLWGRVRGISGGSIFNESCHWVEISDIGEMMIPNEDFVIQMVNSIILNILRLKTLQSLGIDLCPPMSRGCNHLIKDISISCLQLNHMKQFLSRSLAQRFTSPRQSFSRIGTQIPRCLRCSCILKSNHQRSMPPPPPMSANGPRPVPGAMPPLPPPAPLGARPPSMPPPQGLKSNSTKLLRNTFLALTECVVAQGLGLALGAAVLDQKSATNTCIGVDSMFRMFQNRQSERNSLYKEYAEKLLQSGQVYGCFCSNEELEKMKEDAKLKQLPPVYTVSLKVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPNFAHVSLILAPDRSKLSKRHGATSFGQYREMGYLPEAMTNYLALLGWGDGTENEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEDLNKLIAERWKTSGMLTISEGPFVDDSIQLLKDGIDLITDADTALSNLLSYPLHSTLQSHEAESVIQDNLSEFCASFLAAYDSGDLLRALEEGQAGWKNWLKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGATVVLLYKAGAPSASADWKTSRSRYRSYCCIAL* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0855 777 SMART CactinC_cactus_3 52 179 - -
Psa6g0855 777 Gene3D - 57 174 - -
Psa6g0855 777 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 73 167 IPR031781 -
Psa6g0855 777 MobiDBLite consensus disorder prediction 43 59 - -
Psa6g0855 777 Gene3D - 395 449 - -
Psa6g0855 777 Pfam Anticodon binding domain 634 750 IPR045462 -
Psa6g0855 777 Gene3D HUPs 450 608 IPR014729 -
Psa6g0855 777 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 400 448 - -
Psa6g0855 777 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 452 753 - -
Psa6g0855 777 SUPERFAMILY Nucleotidylyl transferase 400 592 - -
Psa6g0855 777 MobiDBLite consensus disorder prediction 1 64 - -
Psa6g0855 777 Gene3D - 667 756 IPR020751 -
Psa6g0855 777 PANTHER GLUTAMATE--TRNA LIGASE 452 753 - -
Psa6g0855 777 PANTHER GLUTAMATE--TRNA LIGASE 400 448 - -
Psa6g0855 777 Pfam tRNA synthetases class I (E and Q), catalytic domain 399 439 IPR020058 GO:0004812|GO:0005524|GO:0043039
Psa6g0855 777 Pfam tRNA synthetases class I (E and Q), catalytic domain 451 599 IPR020058 GO:0004812|GO:0005524|GO:0043039
Psa6g0855 777 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 593 752 IPR008925 GO:0000049
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0855 Psa-Chr6 30096641 30106185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0855 1 172 C2H2 Transcription Factor Family AT2G32600 64.762 1.20e-84 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0855 K01885 - gmx:100787983 609.372