Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0829 ATGGCTTCGTCTTCGTCACCAACAACAACATTGAGCCGGAGAAGAACACAAGCTCCGATTCCAGCTCCGAAGAAACTCTCCAACTTCGACGACGTCGTTTGCCAGAAATGCAGCTCCGGCAAATCCCCAACCAAGTTGCTCCTCTGCGACAAATGCGACAAAGGCTATCACATCTTCTGCCTCTCACCTATCCTTGCTAAAGTTCCCAAGTCCTCTTGGTTCTGCCCCTCTTGCTCCCATACTACCACCAACAACCCTAAATCTTTTCCTCTTGTACAGACGAAGATTATTGATTTCTTCAAAATCCAACGGTCTTCTGAAGCATCTCAGATTCCGAATCAAGATTCAAAGAAGAAGAGAAAGAGGAGCAGTAGTTTAGTGGTTTCAAAGAAGAAAAGGAAGCTGTTGCCGTTTGCTCCGAGTGATGATTCTAGGAGAAGATTAGTACAGATGGCTTCGTTGGCAACTGCGCTGACTGCAACTAAAACGGAGTTTAGTAATGAGCTTACTTATATGCCTGGAATGGCTCCAAGGGATGCTAATTCTCCTGCTCTTGAACATGGTGGAATGCAGGTCATGTCAAAAGAAGACATTGAGACTCTTAACTTATGCAGAAGTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTTTGATCCTGTAGAAGGCTTCACTGTGGAAGCAGACAAATCCATCAAAGATTTGACAATAGTAACAGAATATGTTGGAGATGTAGATTTCTTAAAGAACCGGGAATACGATGATGGGGATAGCATTATGACACTTCTTTTTGCTTCTGATCCTTCACAATCGCTGGTCATCTGCCCAGATAAACGAAGCAACATAGCACGATTTGTTAATGGCATCAACAATCACACACT 887 0.4374 MASSSSPTTTLSRRRTQAPIPAPKKLSNFDDVVCQKCSSGKSPTKLLLCDKCDKGYHIFCLSPILAKVPKSSWFCPSCSHTTTNNPKSFPLVQTKIIDFFKIQRSSEASQIPNQDSKKKRKRSSSLVVSKKKRKLLPFAPSDDSRRRLVQMASLATALTATKTEFSNELTYMPGMAPRDANSPALEHGGMQVMSKEDIETLNLCRSMMERGECPPLMVVFDPVEGFTVEADKSIKDLTIVTEYVGDVDFLKNREYDDGDSIMTLLFASDPSQSLVICPDKRSNIARFVNGINNHT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0829 295 ProSiteProfiles Zinc finger PHD-type profile. 31 81 IPR019787 -
Psa6g0829 295 SUPERFAMILY SET domain 206 289 IPR046341 -
Psa6g0829 295 MobiDBLite consensus disorder prediction 1 16 - -
Psa6g0829 295 SUPERFAMILY FYVE/PHD zinc finger 30 82 IPR011011 -
Psa6g0829 295 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 11 295 - -
Psa6g0829 295 Gene3D SET domain 120 295 IPR046341 -
Psa6g0829 295 PANTHER HISTONE ACETYLTRANSFERASE 11 295 - -
Psa6g0829 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 97 IPR013083 -
Psa6g0829 295 Pfam PHD-finger 33 79 IPR019787 -
Psa6g0829 295 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g0829 295 ProSitePatterns Zinc finger PHD-type signature. 34 78 IPR019786 -
Psa6g0829 295 MobiDBLite consensus disorder prediction 108 128 - -
Psa6g0829 295 CDD PHD_RSF1 34 78 - -
Psa6g0829 295 SMART PHD_3 33 79 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0829 Psa-Chr6 29112540 29114586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0829 29 78 C2H2 Transcription Factor Family AT3G01460 46.000 3.58e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g0829 PHD 4.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0829 K24406 - gmx:100775247 412.535