Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0827 ATGACTTCCCGTTTTCTGCTAAAACCTCTGAGATTCAGTTCGCGTTTAAACGCCGTTAACCTAAGAAGTTACCGTGTATCAGAGATGAACTCTTCCGGTAGGGTTTCGAGTAACGGTGGCGGCGGCGGCGGCGAAGTTCGCTTCCCGTTATCTGCGTCGAACGCTTTGATCATTCAGAAAGGTGATATCACGAAATGGTCCATCGATGGTTCCACTGACGCAATCGTGAATCCTGCAAATGAGAGAATGCTTGGAGGTGGTGGTGCTGATGGAGCTATACACAGGGCTGCAGGTCCAGATCTTCTTAGAGCATGTCGGAATGTTCCAGAAGTCAGGCCCGGAGTTCGCTGCCCCGCGGGGGAAGCAAGGATCACACCAGGTTTCTTGCTACCTGCCTCTCACGTTATTCATACTGTTGGCCCAATCTACGATGTTGATAGTAATCCTGCTGCCTCTCTGGCAAGTGCTTACAGGAATAGTTTGAGGGTTGCAAAAGAGAACAACATTCAGTATGTAGCATTCCCAGCCATATCATGTGGTATCTATGGATACCCTTATGAAGAAGCTGCTACTGTAGCAATTTCTACCATCAAAGAGTTCCAAAATGACTTTAAGGAGGTCCACTTTGTTCTATTCGAGTCTGATATTTATGGCATTTGGTTAAATAAGTCGGATGAATTGCTGAAAGATTAG 693 0.4661 MTSRFLLKPLRFSSRLNAVNLRSYRVSEMNSSGRVSSNGGGGGGEVRFPLSASNALIIQKGDITKWSIDGSTDAIVNPANERMLGGGGADGAIHRAAGPDLLRACRNVPEVRPGVRCPAGEARITPGFLLPASHVIHTVGPIYDVDSNPAASLASAYRNSLRVAKENNIQYVAFPAISCGIYGYPYEEAATVAISTIKEFQNDFKEVHFVLFESDIYGIWLNKSDELLKD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0827 230 CDD Macro_OAADPr_deacetylase 56 223 - -
Psa6g0827 230 Pfam Macro domain 76 193 IPR002589 -
Psa6g0827 230 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 41 229 - -
Psa6g0827 230 SUPERFAMILY Macro domain-like 55 225 IPR043472 -
Psa6g0827 230 Gene3D Leucine Aminopeptidase, subunit E, domain 1 45 230 IPR043472 -
Psa6g0827 230 ProSiteProfiles Macro domain profile. 43 228 IPR002589 -
Psa6g0827 230 SMART YBR022w_8 55 193 IPR002589 -
Psa6g0827 230 PANTHER MACRO DOMAIN-CONTAINING PROTEIN VPA0103-LIKE ISOFORM X1 41 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0827 Psa-Chr6 29100943 29103555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0827 61 166 C2H2 Transcription Factor Family AT5G01310 35.294 1.80e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0827 K23518 - gmx:100811169 343.584