Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0825 ATGAGTAGTTTAAGTGAAGAAGTTCAGTTTTTTGATGCAGATGATGATATTGTGTCAATCTCAGATGCAAATGGGATTGCTGAAAACCCTGAAGTTGTTGATTCTGGTTCTTCTTCAGTGGAAGGTTTGTTGAGAGATTTTGGATATGAATTGTGGACTAGGAGTCCGGGTAGTATTCGGGAGCGAAGGAGTAAGTTTAAAACATGGATGGAATTGAGTTTGGATCAGAAAAACCTTGAGAGTTTGGTAGATGGAAGTGGTTGTGAAAGGGAAGATGAGATGAATAGGATGAAAGATGGAGTTGATAGGATGAATAAAAGTTATGGTTGTGTGGAGGATTTCTTTTCGACTCGGTCAACCATCTCTTGTCTGTCTTCGATGAATTCTTCATCAGAGTTCAGTTTGGTGGAGAATTCACCATGCCGAGATGAGAGTTTGGAAAATGGGGTAGGGTCTAATGAGGATCGGGTGGGGCAGGGTAGGGAGAATAATGACCAGTTGGTGGTTTCTGATGAATTGGAAAACGCAAACACCGTAGGGTTCTCTCCTATGTACCAACATGAGATTGGTAAGGAAATCGAAGAGACGAGTGTTTTTGAGTCGTGGAAGAAGAGGGCTAAAAAGGGTTTGTTAAAAAAATTACGATCAATGTCATGCATGATGGATGGACAACAAGGAGAATCTGATAACAGGAAGAACGAAAGCGGTGTTTCATTCTCGGGTTGTAAGATTCAACGTGTTAAGGTCCGTCAATGCAGGAAGCAAAGAAAGGAGCTTTCGGCTCTTTATACAGGACAAGATATTCAAGCACATGAAGGTCCGATTTTTACCATGAAATTTAGTCCTGACGGCCAGTATCTTGCTAGTGCCGGCGAAGATGGAGTTGTACGATTATGGCAAGTTGTTGAGGAGGAGAGACATAATGAAATCGACATTCCAGAAGTTGACACATCCTGCATTTACTTTACAGTGAATGATCTCTCTGAATTGACACCCTTGTTTATGGATAAGGATAAGATTAGAAATGCCAAGAGCCTGAAAAAGACATCAGATTCGGCTTGCATCATTTTCCCTCCTAAGGTCTTCCGGTTGTTGGAGAAACCACTGCACGAGTTCCACGGTCATGAAGGTGAAGTTTTGGATCTCTCTTGGTCAAAACATAATTATCTGCTGTCATCTTCAGTTGATAAAACTGTCCGGCTATGGCAAGTTGGACATGACTGCTGCTTGAAAGTTTTCTCACACAGTAATTACGTGACATGCATACAATTCAATCCCGTGGATGATAATTATTTCATTAGCGGATCAATAGATGGAAAAGTGCGCATTTGGGGAATTCCTGATTGTCATGTTGTTGATTGGACCGATGTCAAGGAAATTGTCACCGCAGTGTGCTATCAACCTGATGGACAGGGAGGAATTATCGGGTCCATGACAGGAAATTGTCGGTTTTATAGTGTATCAGATAATCACTTTCAGATGCAATCACAAATATGCTTACTTGGTAAAAAGAAATCTCCCGGGAGAGGAATAACTGGCTTTCAGTTTCTTCCACAAGATAGTAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCATTGAAGGGCTTAATGTTGTTTGCAAATTCAAAGGCCTTAGTGCAGGGAGCCTAATGTCGGCATCTCTTACTTCGGATGGAAAACACATTTTATCAGCGTCTGAAGACTCCAATGTATATCTGTGGAATGTTAGTGACGACGAGTCTCACACCATGAAGGCTAAGAAGATTAAGTCCTGCGAGCGGTTTTATTCAAACGCATCTGTTGTAGTACCTTGGTGTGGTTTGAAATCCGACAACATTGAAAATTCTAAACCATTGGATGTCCTAAATAAAAGTTCACCCCAAGCTCTATGCCTCGATCCACCGTCTTCATTTTCTCTAAGCCAAGATTTTTTCTTGGATTCTATCCCGAAAGGTTCCGCAACTTGGCCCGAAGAAAAACTTCCTACTTCAAGAAGCCCCAAGTCTAAAAAATCCGCACTGCACAAATCTGCATATAAGTTCTTGAAATCCTCTTGCAAGAGTACTTCCAATTGTCATGCGTGGGGACTAGTCATCGTGACTGCTGGTTTGGACGGGCGAATAAAATCGTTCCACAACTACGGACTACCCGTACTCGTTTGA 2172 0.4176 MSSLSEEVQFFDADDDIVSISDANGIAENPEVVDSGSSSVEGLLRDFGYELWTRSPGSIRERRSKFKTWMELSLDQKNLESLVDGSGCEREDEMNRMKDGVDRMNKSYGCVEDFFSTRSTISCLSSMNSSSEFSLVENSPCRDESLENGVGSNEDRVGQGRENNDQLVVSDELENANTVGFSPMYQHEIGKEIEETSVFESWKKRAKKGLLKKLRSMSCMMDGQQGESDNRKNESGVSFSGCKIQRVKVRQCRKQRKELSALYTGQDIQAHEGPIFTMKFSPDGQYLASAGEDGVVRLWQVVEEERHNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKIRNAKSLKKTSDSACIIFPPKVFRLLEKPLHEFHGHEGEVLDLSWSKHNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWGIPDCHVVDWTDVKEIVTAVCYQPDGQGGIIGSMTGNCRFYSVSDNHFQMQSQICLLGKKKSPGRGITGFQFLPQDSNKVMVTCADSQVRIIEGLNVVCKFKGLSAGSLMSASLTSDGKHILSASEDSNVYLWNVSDDESHTMKAKKIKSCERFYSNASVVVPWCGLKSDNIENSKPLDVLNKSSPQALCLDPPSSFSLSQDFFLDSIPKGSATWPEEKLPTSRSPKSKKSALHKSAYKFLKSSCKSTSNCHAWGLVIVTAGLDGRIKSFHNYGLPVLV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 404 IPR001680 GO:0005515
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 404 - -
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 587 IPR001680 GO:0005515
Psa6g0825 723 SUPERFAMILY WD40 repeat-like 268 713 IPR036322 GO:0005515
Psa6g0825 723 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Psa6g0825 723 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Psa6g0825 723 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 444 IPR001680 GO:0005515
Psa6g0825 723 ProSitePatterns Trp-Asp (WD) repeats signature. 565 579 IPR019775 -
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 301 - -
Psa6g0825 723 Gene3D - 239 503 IPR015943 GO:0005515
Psa6g0825 723 SMART WD40_4 365 403 IPR001680 GO:0005515
Psa6g0825 723 SMART WD40_4 447 486 IPR001680 GO:0005515
Psa6g0825 723 SMART WD40_4 406 445 IPR001680 GO:0005515
Psa6g0825 723 SMART WD40_4 497 537 IPR001680 GO:0005515
Psa6g0825 723 SMART WD40_4 261 300 IPR001680 GO:0005515
Psa6g0825 723 SMART WD40_4 538 578 IPR001680 GO:0005515
Psa6g0825 723 PANTHER WD REPEAT DOMAIN 44 6 722 IPR040324 -
Psa6g0825 723 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 722 - -
Psa6g0825 723 Gene3D - 504 716 IPR015943 GO:0005515
Psa6g0825 723 Pfam WD domain, G-beta repeat 367 402 IPR001680 GO:0005515
Psa6g0825 723 Pfam WD domain, G-beta repeat 269 299 IPR001680 GO:0005515
Psa6g0825 723 Pfam WD domain, G-beta repeat 409 444 IPR001680 GO:0005515
Psa6g0825 723 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0825 Psa-Chr6 28994406 28999781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0825 266 460 Miscellaneous Gene Families AT5G08390 23.585 4.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0825 - - mtr:MTR_1g007740 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1763 5 137074592 137077382 Psa6g0825 6 28994406 28999781 ECH
Psa7g0525 7 35680348 35683697 Psa6g0825 6 28994406 28999781 ECH
Psa6g0825 6 28994406 28999781 Psa6g0825 6 28994406 28999781 ECH