Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0818 ATGGACGGTGACCGAAAAATGGCCGTTCCTCATCTGGATGGTTCCGCTGATGGTGCTCAGAAACTTAGAGCAGCACTGCACGGGAGGACTACTGGTCCTACAAGGCGTTCTACAAAAGGGCAATGGACTCCTGAGGAGGACGAGACATTGCGGAAGGCTGTTGAACGTTTCCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCTGAACTTGTTAAAGGGCCATGGTCCAAAGAGGAAGATGAAGTGATGATTGAATTGGTGAACAAAATTGGGCCTAAAAAGTGGTCAACTATCGCACAACATTTACCTGGTCGTATCGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAAGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAAATTTATGGGAATAAATGGGCAGAATTAACGAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCAGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTACTTACTCAGCTGCAATCTGTACCTCATGATGGAAATGCAAGTCAATCAATGGTTACAACATCTTCAACGGTGCAATGTAATGCAGATGATAATGTTCTTCAGGGGACTGAAGGAGATGAAGTTTTAGAGTATAGCCACGACTCAGCTAATGCTCTCCACTTTCCATCCACTAGAGAGATGACCAGTGTTGACTTGCAAACTGTTGGGGGAGAATGTAGTCTTGGGACGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATATTACATATCAATTGATGATGCTACTACATGCATTCCAGAAATTGCTCATCAGGAAGCATGTTCTTCTGAATTTAATGAACAATTCTCACATGAACCTGGAAATTCCATAAATGAGGATTGCCAGTTTAATTTACACACTTTGCCCAATATTTCATCAATAGACTTAGGGAAGGACTCCTCTCAGTTGCAAAGAGATTATATGGAATCTAGAGATCCTAGTGGAATACGTGACTTGGCGAATGTTTCAATGGCCATGGAAACTACATCTACGGAGGCTGCTAAACCAGATCATATGCTGATATCTGATGATGAATGTTGCAGAGCGCTATTTTCAGAGGCAAATAATGATAGATGTTTTATCCCTGGAGATTATAATAAAGATGTTGATACTGTTGAATTTTCTGGTCACCCCCCATTTGTTTGTCAATCATGTCATTTTCAGATTTCCGAAAATTGTGAAACCTCGACTCTGCCATTAACTTGTCCTCAGTGTTCGAATAATTTTAAAGGAATGGCATCCTCCCAATCTACTCGACCAGTACATTCCGCTGAGCCTGAGGATCAGCAGTTTGTTTCCAGTGCACCTGATAACTTCACTTATGCCATTGACATGCCCAGTTCTCCTTGTATTGATGCTACAGATGGTGGAGTAATGAGGGATGTTAAGCAAACCTGTTATCCAACAGATGAAAGCCCAAACATGCACACAGAAAAGGAGGGCAAGGGAGCACTATGTTATGAACCTCCCCGTTTTCCGAGCACGGATATTCCTTTCTTGAGCTGTGACCTTGTGCAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCGTCTATGAACTGTATGACTCCATCAAGGTTGTGGGACTCGCCTTCTCGTGATGATAGTCCAGAAGCATTATTGAAAAGTGCTGCTAAAACTTTTACGGGGACACCATCAATATTAAAAAAACGACGCAGAGATTTGTTATCCCCACTTTCAGATAAAAGAATTGGCAAGAAGCTTGAAACTGAAATGGCATCCTCTTTGTCCAAAGCCTTTTCTAGTTTGGAAGCAGATATACTCTCTCCGTCTTCATTGCAAAAGCAAAACTCCGAGGCTCCTGTTTTTGACGACGATAAAGAAAATTGTGGACAAGCTGATAAAGGTAAACAAGTAGAGGAGATAATTAAATCTGCAGTTTTGGAAGAAAAGATGTCCCAAAGAGATGCTCTTGACAGTAATTCTCCTGGTAAGGTTAAGCAGCAACCTTTTGATGTTGATTCTAAAATGAAGATTGATGCTACTGCTGCTGTTGAGATTGTGCAACAATCTTCTGGTGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATATTCATCTGATGAAGTTGGTTTTAGAGACAGAGTTCTAGGTTCTAGTGTTATAACGCCCAGAAGCATGAACAATAGGAGCTCAGAAATAGCTCCAAACCAGAGCATTCCTTCAAAGCCATCTTCTGAGAATCAACGCTCAAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAGATCTTACAGTTTCTGTTACTCGAGCAAAAGCTCCAGAGGAGACTTCGGGGGATCAAAATAAAAACGATGGAGAATTTGAAACGTCTAGCATATTTGGTGGAACACCTTTCAGGAAAGGTTTTGAATCACCTTCTGCATGGAAATCTCCTTGGTTCAGGAATACTTTTCTCTGTAGCCCAAATACTGAAATTACAATTGAGGATTTTGGATTTTTCAAAAGCCCGGGAGGTGATAGAAGCTACGATGCTATCGGGTTGTTAAAAGAAGTTGGTGAACAAACTGCTGCTACATATGAAAATGCACAGGAGATTTTGAATAATGATACTCCTAAAGCATTACCTAAAGGCGACGACACATCAGGAGATGATAAGAATTGCGACGACGAAAATAATGATTCTAACAATGCAAACATTTCTAAATTGACTTCAAATGCTTTGGTTGAGCGCCGCGTACTCGACTTTAGTGAATGTGGATCACCTGATAAGAGTGATAGCAGCAAATCCTCAGCTAGTCAGCCATGA 2949 0.4137 MDGDRKMAVPHLDGSADGAQKLRAALHGRTTGPTRRSTKGQWTPEEDETLRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKIGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSVPHDGNASQSMVTTSSTVQCNADDNVLQGTEGDEVLEYSHDSANALHFPSTREMTSVDLQTVGGECSLGTDHSPSQASCSEPYYISIDDATTCIPEIAHQEACSSEFNEQFSHEPGNSINEDCQFNLHTLPNISSIDLGKDSSQLQRDYMESRDPSGIRDLANVSMAMETTSTEAAKPDHMLISDDECCRALFSEANNDRCFIPGDYNKDVDTVEFSGHPPFVCQSCHFQISENCETSTLPLTCPQCSNNFKGMASSQSTRPVHSAEPEDQQFVSSAPDNFTYAIDMPSSPCIDATDGGVMRDVKQTCYPTDESPNMHTEKEGKGALCYEPPRFPSTDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCMTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRRRDLLSPLSDKRIGKKLETEMASSLSKAFSSLEADILSPSSLQKQNSEAPVFDDDKENCGQADKGKQVEEIIKSAVLEEKMSQRDALDSNSPGKVKQQPFDVDSKMKIDATAAVEIVQQSSGVLSEHDRNDLSLYSSDEVGFRDRVLGSSVITPRSMNNRSSEIAPNQSIPSKPSSENQRSRFSSPCVRAKEHEDLTVSVTRAKAPEETSGDQNKNDGEFETSSIFGGTPFRKGFESPSAWKSPWFRNTFLCSPNTEITIEDFGFFKSPGGDRSYDAIGLLKEVGEQTAATYENAQEILNNDTPKALPKGDDTSGDDKNCDDENNDSNNANISKLTSNALVERRVLDFSECGSPDKSDSSKSSASQP* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0818 982 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Psa6g0818 982 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Psa6g0818 982 MobiDBLite consensus disorder prediction 801 816 - -
Psa6g0818 982 MobiDBLite consensus disorder prediction 913 982 - -
Psa6g0818 982 Gene3D - 91 142 - -
Psa6g0818 982 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Psa6g0818 982 Gene3D - 38 90 - -
Psa6g0818 982 CDD SANT 42 85 IPR001005 -
Psa6g0818 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Psa6g0818 982 PANTHER TRANSCRIPTION REPRESSOR MYB5 538 974 - -
Psa6g0818 982 PANTHER TRANSCRIPTION REPRESSOR MYB5 6 455 - -
Psa6g0818 982 PANTHER MYB PROTEIN-RELATED 6 455 - -
Psa6g0818 982 PANTHER MYB PROTEIN-RELATED 538 974 - -
Psa6g0818 982 CDD SANT 145 185 IPR001005 -
Psa6g0818 982 Gene3D - 144 209 - -
Psa6g0818 982 MobiDBLite consensus disorder prediction 924 939 - -
Psa6g0818 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Psa6g0818 982 CDD SANT 93 137 IPR001005 -
Psa6g0818 982 MobiDBLite consensus disorder prediction 1 45 - -
Psa6g0818 982 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Psa6g0818 982 MobiDBLite consensus disorder prediction 768 800 - -
Psa6g0818 982 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Psa6g0818 982 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Psa6g0818 982 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Psa6g0818 982 MobiDBLite consensus disorder prediction 768 844 - -
Psa6g0818 982 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Psa6g0818 982 MobiDBLite consensus disorder prediction 968 982 - -
Psa6g0818 982 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Psa6g0818 982 SMART sant 90 139 IPR001005 -
Psa6g0818 982 SMART sant 142 190 IPR001005 -
Psa6g0818 982 SMART sant 38 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0818 Psa-Chr6 28577950 28585983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0818 5 972 MYB Transcription Factor Family AT4G32730 39.163 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g0818 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0818 - K09420 aprc:113848458 1266.14