Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0813 ATGGACTTGGATAGCATTGAGTGTGTTTCATCTTCCGATGGAATGGATGAAGATGAGATCCAACACCGTATTCTTCATCCTCATCCATATCAACATCCACATCAACATCATCCTCATCACTCTGAGTTTTCTTCCTTGAAACCTCGTAATGGAGGAAACACTAATAACATTAATCATGTTATTGGTTCTACAGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCCGTCTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGCCACACATTGTGTTCCACATGTAAAACAAGAGTGCACAATCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATCAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTCGAGTTACCATGCAAGTACTACTCTCTCGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGACGGTTTGCAATTTTAGACCATACACTTGTCCTTACGCCGGATCAGAGTGCTCTGCTGCTGGTGATATTAACTTCCTCGTCGCACATTTGAGGGATGATCATAAGGTCGACATGCACACAGGATGCACATTCAACCATCGTTATGTAAAGTCAAATCCGCGTGATGTCGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTCGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTCCGTTTCATGGGAGACGAGAACGATGCTAGAAACTACACATATAGCCTCGAAGTTGGAGCCAATGGTAGAAAACTCATTTGGGAAGGTACACCACGGAGTATCCGCGACAGCCATCGTAAAGTCCGAGATAGTCACGACGGACTCCTAATTCAACGAAATATGGCTCTATTTTTCTCTGGTGGTGATAGGAAAGAACTGAAACTAAGAGTGACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTGTGTATACCAAATCTTTGCAGCTAA 1023 0.4389 MDLDSIECVSSSDGMDEDEIQHRILHPHPYQHPHQHHPHHSEFSSLKPRNGGNTNNINHVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAAGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPRDVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLLIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0813 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 182 IPR013083 -
Psa6g0813 340 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 183 319 IPR008974 GO:0005515
Psa6g0813 340 Pfam Seven in absentia protein family 120 319 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa6g0813 340 ProSiteProfiles Zinc finger RING-type profile. 78 114 IPR001841 -
Psa6g0813 340 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 331 - -
Psa6g0813 340 CDD RING-HC_SIAHs 76 114 - -
Psa6g0813 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 130 IPR013083 -
Psa6g0813 340 SUPERFAMILY TRAF domain-like 131 323 - -
Psa6g0813 340 SUPERFAMILY RING/U-box 70 118 - -
Psa6g0813 340 CDD Sina 192 320 - -
Psa6g0813 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 331 - -
Psa6g0813 340 ProSiteProfiles Zinc finger SIAH-type profile. 131 191 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0813 Psa-Chr6 28439572 28442251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0813 62 326 C3H Transcription Factor Family AT2G41980 77.239 9.13e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0813 K04506 - tcc:18605771 640.958