Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0800 ATGGGAAGAAAAGGAGGAGGCTGGTTTTCCTCTGTCAAGAAAGTTTTCAAGTCTTCTTCATCTTCTAAAGACACGACAGTGCCCGTCTCCGCGCCAGTGCAGCCAGACAAAAAGAAGGAAAACCGAGAGAAATTGGAGAATGAAGTGGCGGAGGAGGTTTCATTCGAGCATTTTCCTGCAGAGAGTTCACCCGACGATGTAACCAATGAGGAGAGTACAACATCAACTCCTGCAAGAGACGATAGAACTCACGCCATCGCTGTTGCAGAAGCCACCGCAGCCGCTTCAGCAGCTGCTGTTGCAGCTGCTCAAGCAGCTGCTAGAGTTGTACGATTGGCCGGTTACGGACGCCACAACAAGGAAGAAAGAGCAGCCACATTCATTCAATCACACTACAGAGGATACCTAGCTCGACGTGCTTTGCGCGCATTGAAGGGGTTAGTGAGGCTGCAGGCGTTAGTGAGGGGACACAATGTGCGGAAGCAAGCTCAAATGACGATGCGGTGTATGCAAGCATTGGTACGGGTGCAGGCGCGAGTTCGAGCGCGACGACTTCAATTGAGCCACGAAAATTTTGAGAAGGAAATGGATGAGTATGAAGAAGAATTTGTGAGACAACAAGTGAGTTTTAATAAGCCTATGAGTCCTATGAGAAGGTCATCGGGCATTAATAATAATAATGGTTTGGATCATAACAAACGTCAAAGTAGCAAAAAAGCTAAAGAAAGTGATTTGAAAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAACAGCAACAACAAAAGCAACATCTGCTACATAGAGATAAGAATGGTGAAGATGTTGTTATGAGAAACTATGATTCTAATGATAAAGAAAAATCCCAATGGGGTTGGAATTGGTTGGAGCGTTGGATGTCATCACAACCCTACAATGCAAGAAACTTAGGACAACGTGAAACCTCTTACATGACACTACCTTCAACAACATCAACAACAACAGATAACATGTCCGAAAAAACGGTTGAAATGGACATGGTTGCAACACCAAGTAGAAACAACTTCAATATGGGCTTAATGGGCCAAGATTTTCGTGATGCAAGCCCAACTTTCAATAGGGTCCATCAGAGACCGCCAAGCCCGGGCCGACCTAGCTACATGGCCCCGACTCAATCTGCTAAGGCTAAGGTTAGGGTCGAAGGCCCATTTAAGCAAAGGGTTTCATCCGGGCCTAACTGGAACACGTCTACGAAGGGAGGATCGGTTATTGGATCGGGTTGTGACTCGTCTAGCTCGGGCGGTGGAACGACTACTTACCAGATTCCGAGAAGCCCAGGCCCAAAAGTTAACGGTGTTCGTTCGCAGTCTAATCGGATTGTGAGTAGTAGTCAAGAGTATGTTGAAGATTGGGCCCTTCCACTTGGAGCCCATGGTTGGGCTTAA 1446 0.464 MGRKGGGWFSSVKKVFKSSSSSKDTTVPVSAPVQPDKKKENREKLENEVAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRTHAIAVAEATAAASAAAVAAAQAAARVVRLAGYGRHNKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHENFEKEMDEYEEEFVRQQVSFNKPMSPMRRSSGINNNNGLDHNKRQSSKKAKESDLKKHEAAMKRERALAYAFNYQQQQQKQHLLHRDKNGEDVVMRNYDSNDKEKSQWGWNWLERWMSSQPYNARNLGQRETSYMTLPSTTSTTTDNMSEKTVEMDMVATPSRNNFNMGLMGQDFRDASPTFNRVHQRPPSPGRPSYMAPTQSAKAKVRVEGPFKQRVSSGPNWNTSTKGGSVIGSGCDSSSSGGGTTTYQIPRSPGPKVNGVRSQSNRIVSSSQEYVEDWALPLGAHGWA* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0800 481 Coils Coil 238 258 - -
Psa6g0800 481 MobiDBLite consensus disorder prediction 405 455 - -
Psa6g0800 481 MobiDBLite consensus disorder prediction 408 455 - -
Psa6g0800 481 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Psa6g0800 481 Coils Coil 182 209 - -
Psa6g0800 481 MobiDBLite consensus disorder prediction 213 231 - -
Psa6g0800 481 Gene3D - 118 172 - -
Psa6g0800 481 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Psa6g0800 481 PANTHER IQ-DOMAIN 21 1 454 - -
Psa6g0800 481 MobiDBLite consensus disorder prediction 35 59 - -
Psa6g0800 481 MobiDBLite consensus disorder prediction 213 245 - -
Psa6g0800 481 SMART iq_5 143 164 IPR000048 GO:0005515
Psa6g0800 481 SMART iq_5 120 142 IPR000048 GO:0005515
Psa6g0800 481 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Psa6g0800 481 Pfam IQ calmodulin-binding motif 148 163 IPR000048 GO:0005515
Psa6g0800 481 Pfam Protein of unknown function (DUF4005) 376 435 IPR025064 -
Psa6g0800 481 MobiDBLite consensus disorder prediction 17 82 - -
Psa6g0800 481 PANTHER IQ-DOMAIN 5-RELATED 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0800 Psa-Chr6 27967779 27971661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0800 1 449 IQD Protein Family AT3G49260 50.529 7.23e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0800 - - gmx:100798026 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0800 6 27967779 27971661 Psa6g0800 6 27967779 27971661 ECH