Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0791 ATGATAATTAAAAAGAATCTCAAATCCGAAATGCCGACTCGGAAACGGGAGAGACTCGGTAACTCGGAGGGGGACGAGTCAAGGTTGACTCAGAAAAACAAAAAGAAGAAATTTAATGGGAATTATCCGTTGAATCTTCTCGCCGGTGCAATTCCCGCTAGCTTTACTGGATTACTCGGTGCCACCGTTGCAACCACCGTAGCGTCATCGGATAACGGGTTTTCGTTGGATAATGGAAAACCTGGTGTTAAGAATGCGGCGAACCGGCCGCCGCTGGTGAGGACTTCCCGTGGCCGGCTTCAGGTGTTGCCGTCGCGGTTTAATGATTCTGTTATTGTGAATTGGAGGAAGGAAGGAAGGAACAACAACAACGCCGCCGCAGATACTAGCTTTCGGGAATTTGAATTTGATGAATTTGGTTTCAGAAATTGTGGTGGAAAGGGGAAGAATGGGAATGGGAATGGGACGGCTGCTGGTGGCCGCAACCGGCCTCGCGGGTATTCGGTTTTGTGTGAGGAGGTGTTGCATAAGAATTTCGGTGTTGCTGCTGGCAAGGAATTGAGTTTGCGTGAGATTTTTGAAGAAACGAAGTTGAATAATGAAGTTTTGAAGAAGGAGGAGAAGAAGAAAGAGGGGTTGTTTGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCTAAGGCTAAGAAGAAGGAACCTTTTTGGCCTGCAATTGTCATTGATCCTATTTATCAAGCACCTGAACTGGTTTTGAGATCATGTATACCTGATGCTGCTTGTGTCATGTTTCTTGGCTACTCTGGGAATGAAAACCACAGGGATTTTGCATGGGTGACATATGGAATGATTTTTCCATTTGTGGATTATGTAGACAGGTTTCAAGAGCAGTCTGAGTTGAGTTACTGTAATTCCTCTCAATTTCAAGTGGCGATTGAGGAAGCGTTTTTGGCTGATCAGGGGTTTGTAGAGAACTTGAAAGAAGATTTAGATGCAGTGGCTGGTAATAATGGTTGTAGTAATAGCTCTATTCTTAAAGTCTTTCAGAATGTAGCTGCTTCAAATAAGAATGCGGGTGGTCCTGTTCAGAAGAAGGATTTATTTGAAAAAGAGAAAAATGCGCGACTTTGTGCAGAATGTGGATTGGACGTTCCTCTCAGTATGTCAAAGAAAAAAAAGGATTTGACTCCTAGTGGTCAACTCCTATGCAAATCATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGCGACAAAATCTCCAGCATCCTTTTCAAGAATCTTGGAAGCACGGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAGTTATCGGATTCAGAAAAATCAAATAAAAAAGTCAAATGGAACAAAAACAATGGGAAGCTAGGACTTCCAAAAAAGGTCAATGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTACGTGCAAGTGTGGTTTGTGTGAGACTGAAAAGCAAGCACTTAGTGAATGGGAGCGCCACACAGGTTCCAAATTTAGAAACTGGAGAACAAGTATTCGGATTAAAGGATCCATGATATCACTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTGTAGTTTATGTCAAACCTAAAAGACCATCCACAAAAGAAAGAAAACAGAAATTGCTTAACTTTCTGCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGTGTCAGATGTCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACGCGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATGTTGATCCATTATGGGTTCATGTCACATGTGCCTGGTTTCGACCTGAAGTATCTTTTGCAAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCGAACTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGCTCGTGCACTCAATGTTGCAAGTGTTCCACTTATTACCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCGGAGAAAAATGGTAAACAGACAACAAGAATGATTTCTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACCGTTTTGATTATACAAACTCCTCATGGGGTCATTTCAACTAAAATCCTTATCCAAAAAAAGAGAAAAGTCGGGTCAAGATTAATTTCATCGAACAGAATAAAGGAAGAAGACACTCCTGTAGCAGATAAGACAGAAGATGATCCATTTTCTGCTGCTAGGTGCCGAATCTTTGTAAGAATAAACCGCACAAAAAAGAGAGCAGCAGATGAAGCCGTTCCTCATAAAGTGAGGGGTCACTGTCATCATCCTCTAGATGCAATTCAGAGATTAAGTCCATGCAAAGTGGTAGACGAGTCTCGAACATTTTCATCATTTAAGGAACGCCTTCATCACCTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGCCTATTTGCACGAAGAGTTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGCGAACAAGTACGGCGCAGCATTGCAGACCTGAGGGAAGCACGTTATAAATTAGAAAGGAAAGACTGCTATCTTTTCAAAATAAGTGAAGAAGTGGTCGTTGATGCAACCGATAAGGGAAATATAGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGTGTGTGGGTCATGACGAGAGCCGGATCGCACTCATTGCCAAAACTAAAGTATCTGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTTCCATGTTTATGTAAAGCTCCAAACTGCAGGAAATTCATGAATTAG 3129 0.4203 MIIKKNLKSEMPTRKRERLGNSEGDESRLTQKNKKKKFNGNYPLNLLAGAIPASFTGLLGATVATTVASSDNGFSLDNGKPGVKNAANRPPLVRTSRGRLQVLPSRFNDSVIVNWRKEGRNNNNAAADTSFREFEFDEFGFRNCGGKGKNGNGNGTAAGGRNRPRGYSVLCEEVLHKNFGVAAGKELSLREIFEETKLNNEVLKKEEKKKEGLFGPEDFYAGDIVWAKAKKKEPFWPAIVIDPIYQAPELVLRSCIPDAACVMFLGYSGNENHRDFAWVTYGMIFPFVDYVDRFQEQSELSYCNSSQFQVAIEEAFLADQGFVENLKEDLDAVAGNNGCSNSSILKVFQNVAASNKNAGGPVQKKDLFEKEKNARLCAECGLDVPLSMSKKKKDLTPSGQLLCKSCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSNKKVKWNKNNGKLGLPKKVNVLCNGVEGIYFPSLHLVTCKCGLCETEKQALSEWERHTGSKFRNWRTSIRIKGSMISLEQWMLQLAEFHAKAVVYVKPKRPSTKERKQKLLNFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDVDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCSEKNGKQTTRMISYCAYHRAPNPDTVLIIQTPHGVISTKILIQKKRKVGSRLISSNRIKEEDTPVADKTEDDPFSAARCRIFVRINRTKKRAADEAVPHKVRGHCHHPLDAIQRLSPCKVVDESRTFSSFKERLHHLQRTENERVCFGRSGIHGWGLFARRVIQEGEMVLEYRGEQVRRSIADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGHDESRIALIAKTKVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0791 1042 PANTHER PHD FINGER PROTEINS 1 1042 - -
Psa6g0791 1042 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1042 - -
Psa6g0791 1042 ProSiteProfiles Post-SET domain profile. 1026 1042 IPR003616 -
Psa6g0791 1042 MobiDBLite consensus disorder prediction 1 33 - -
Psa6g0791 1042 ProSitePatterns Zinc finger PHD-type signature. 610 655 IPR019786 -
Psa6g0791 1042 SMART PostSET_3 1026 1042 IPR003616 -
Psa6g0791 1042 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1042 IPR025780 -
Psa6g0791 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 658 IPR013083 -
Psa6g0791 1042 SMART PHD_3 720 776 IPR001965 -
Psa6g0791 1042 SMART PHD_3 415 467 IPR001965 -
Psa6g0791 1042 SMART PHD_3 609 656 IPR001965 -
Psa6g0791 1042 SUPERFAMILY FYVE/PHD zinc finger 608 672 IPR011011 -
Psa6g0791 1042 CDD SET_SETD1-like 889 1038 - -
Psa6g0791 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 470 IPR013083 -
Psa6g0791 1042 SUPERFAMILY FYVE/PHD zinc finger 412 471 IPR011011 -
Psa6g0791 1042 MobiDBLite consensus disorder prediction 1 36 - -
Psa6g0791 1042 ProSiteProfiles Zinc finger PHD-type profile. 413 469 IPR019787 -
Psa6g0791 1042 ProSiteProfiles Extended PHD (ePHD) domain profile. 661 776 IPR034732 -
Psa6g0791 1042 CDD PHD_ATX3_4_5_like 609 655 IPR042011 -
Psa6g0791 1042 Gene3D - 216 321 - -
Psa6g0791 1042 Pfam PWWP domain 222 315 IPR000313 -
Psa6g0791 1042 ProSiteProfiles PWWP domain profile. 221 290 IPR000313 -
Psa6g0791 1042 Gene3D SET domain 884 1042 IPR046341 -
Psa6g0791 1042 SUPERFAMILY Tudor/PWWP/MBT 214 318 - -
Psa6g0791 1042 Pfam PHD-finger 622 656 - -
Psa6g0791 1042 SUPERFAMILY SET domain 858 1039 IPR046341 -
Psa6g0791 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 778 IPR013083 -
Psa6g0791 1042 SMART set_7 900 1023 IPR001214 GO:0005515
Psa6g0791 1042 Pfam SET domain 911 1016 IPR001214 GO:0005515
Psa6g0791 1042 ProSiteProfiles SET domain profile. 900 1017 IPR001214 GO:0005515
Psa6g0791 1042 Pfam PHD-finger 415 468 IPR019787 -
Psa6g0791 1042 CDD PHD_TCF19_like 416 466 - -
Psa6g0791 1042 Pfam PHD-zinc-finger like domain 663 775 - -
Psa6g0791 1042 ProSiteProfiles Zinc finger PHD-type profile. 607 658 IPR019787 -
Psa6g0791 1042 CDD ePHD_ATX3_4_5_like 664 775 IPR041955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0791 Psa-Chr6 27526161 27535938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0791 610 775 C2H2 Transcription Factor Family AT3G14740 33.143 3.57e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g0791 zf-HC5HC2H_2 5.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0791 - - gmx:100775276 1521.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0791 6 27526161 27535938 Psa6g0791 6 27526161 27535938 ECH