Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0757 ATGATATCAAAAAGAGGCATTGGTGGAATGGAAGTCCCTAAAAAAAGGACTGGCCTTGTGTTTAGAGAGACTGCTAATACCAGAGATGATCAAAATTGCAGCCGAGTGGGTTGCAGTACTGCAGCCAACCCTCCTGTTCAAAAAAGGTTTTCTGAAAAAGTTAAAACTTTAAGGCCATCAACGCAGTCATCTTCAGGTGGCAAGGAGCTAGTTGGTAGTTCTCGTAGAACACCTGCTAACCCAGCAAAACCACTTAAAGAGCCTCGGAGAACATTATCTTCAAGTGGCCTTCCAGCTGAAGAGAAAGGTAGAGAGTCTACTAATGTGATTCGGGCGGAAGTAGGAAAATCTGGTGCAGTATCAAATTCAAGATCTCAAAGGAATTTTAATCAAAGGCCTGGATTGCGTCAACGAGAAACTGAAAGCATTGGTCCGGTGACACAAGCTGTTTCTAGCAAGTATGGATTGAGGAATCTCAGATGCAACACTATATCTGATGCTATCCCTTCTTCTTGCTCATCGTCAGATTCTATCCTTAATAGAAGGAAGACTACTGTGATAAAAATGAGAAGCTCTGAAGGGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGATGACTGGTTCTTCATTGGAAAGATTGAATTGTGGCTCCAGAAATGGCAGATCTAGTTCTGATACAAGAGGATCTAGAAATATTCCTCCTCTGAGGGACAATAGCAGAGCATCGGTTAGAACTGAAAGAACGGTTAGTGGTTATGCCAGGGAAAGATTTTCTAACCAAGGAAATGAAAACTCCAAAGAAAACAATGGGGACAACAGCAGAACATCGGTTAGAACTGAAAGAAAGATTAGTGGTTATGCCAGGGGAAGATTTTCTAAACATGGAAATGAAAACTCCAAAGAAAACAACGGGTCCCGTGATGTGTTGCCTATTTCTCCTCACTCTATTGATCTCAACTCTCCTGTCACAGAGGAGTTTCGTGGTGTTATGCCTATGTCTCCTGAAGAATACAGCACCCCTCATTCTCTAATAATTCAGGATGGCTCTCGGCGCTACAATATGGATGGTATTTCAGAGGTATTATTGGCACTTGAGAGAATGGAACAAGATGAAGAATTAACCCACGAGCAAATGGATTTACTAGAGACCAACTCTATTCTTGATGGACTTAGCTTCTATGATACTCATAGAGACATGCGGTTGGATGTTGATGACATGTCATATGAGGAACTCTTAGCTCTTGAAGAGAGAATGGGCACAGTGAGCACTGGTCTGTCAGAGGAAGCACTCTCTGATAGTCTTAAAAAATGTGTCTATGAGTCTACGCCTTCAGATGATGCAGCCGACTGTGTTGATGAGGATAACGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATTGGAAGACTGCAATGCTCGCATAAATATCATGTTGATTGTGTACAGGAATGGTTGAAGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCGACACTGTCCAACTCGTCGTCGTCATCATCATCATCATCTCATTAG 1557 0.4232 MISKRGIGGMEVPKKRTGLVFRETANTRDDQNCSRVGCSTAANPPVQKRFSEKVKTLRPSTQSSSGGKELVGSSRRTPANPAKPLKEPRRTLSSSGLPAEEKGRESTNVIRAEVGKSGAVSNSRSQRNFNQRPGLRQRETESIGPVTQAVSSKYGLRNLRCNTISDAIPSSCSSSDSILNRRKTTVIKMRSSEGESSSTLKGKKMTGSSLERLNCGSRNGRSSSDTRGSRNIPPLRDNSRASVRTERTVSGYARERFSNQGNENSKENNGDNSRTSVRTERKISGYARGRFSKHGNENSKENNGSRDVLPISPHSIDLNSPVTEEFRGVMPMSPEEYSTPHSLIIQDGSRRYNMDGISEVLLALERMEQDEELTHEQMDLLETNSILDGLSFYDTHRDMRLDVDDMSYEELLALEERMGTVSTGLSEEALSDSLKKCVYESTPSDDAADCVDEDNDDIKCCICQEEYVVGDEIGRLQCSHKYHVDCVQEWLKLKNWCPMCKESATLSNSSSSSSSSSH* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0757 518 MobiDBLite consensus disorder prediction 18 146 - -
Psa6g0757 518 MobiDBLite consensus disorder prediction 273 301 - -
Psa6g0757 518 MobiDBLite consensus disorder prediction 252 272 - -
Psa6g0757 518 MobiDBLite consensus disorder prediction 186 313 - -
Psa6g0757 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 3 89 - -
Psa6g0757 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 91 505 - -
Psa6g0757 518 SMART ring_2 460 500 IPR001841 -
Psa6g0757 518 MobiDBLite consensus disorder prediction 56 71 - -
Psa6g0757 518 MobiDBLite consensus disorder prediction 118 146 - -
Psa6g0757 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 91 505 IPR045191 GO:0061630
Psa6g0757 518 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 89 IPR045191 GO:0061630
Psa6g0757 518 MobiDBLite consensus disorder prediction 24 46 - -
Psa6g0757 518 SUPERFAMILY RING/U-box 454 505 - -
Psa6g0757 518 MobiDBLite consensus disorder prediction 186 238 - -
Psa6g0757 518 ProSiteProfiles Zinc finger RING-type profile. 460 501 IPR001841 -
Psa6g0757 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 505 IPR013083 -
Psa6g0757 518 Pfam Ring finger domain 459 501 IPR001841 -
Psa6g0757 518 Coils Coil 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0757 Psa-Chr6 26755355 26759445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0757 344 504 C3H Transcription Factor Family AT2G15530 43.827 8.59e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0757 - - mtr:MTR_1g009680 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0757 6 26755355 26759445 Psa6g0757 6 26755355 26759445 ECH
Psa6g0757 6 26755355 26759445 Psa5g0585 5 47021291 47025435 PCT