Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0752 ATGGCTGCAACATTATTGAGAAATCGCTCCACATCGTCGGTATTCAATTTGTTCACCAATGCTCTTCGTCGATTCTCTTCTGCACAGGTTGGGAACACTATTCCTGATGAGGCGCGCGAGAGAATGATGTATTCTGACATAAACTCGCAGATTGGAAGTTGTATGCCTCTCTCTGCGATGAGAATTGGAACAATCATTCACAACATTGAGCTGAACCCGGGACAAGGTGGAAAGCTTGTTCGGGCAGCCGGGACCAATGCAAAGATTTTGAAAGAGCCGACATCGGCGTACTGTTTAGTTCAACTTCCGTCTGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCTACTGTTGGCACGGTCTCTAATCCAACTCACGGTGATAGAAAGCTTAGGAAGGCTGGCCATAACAGATGGCTCGGTCGGAGACCGGTTGTTCGGGGTGTGGCTATGAATCCGGTTGATCATCCTCATGGTGGAGGAGAGGGAAAGAGCAAGAGTAGTGGTGCGTGGGGGAAAGGATCACGTACTCCTTGGGTTGACCAAGCAAGGGACCTCACAGTTGAAATGCAGGAAATGGGGTTTAAGGGACATAGTTCAACTTTTTCTGCTGTTATTGGATGTCTGGATTTGCAGAACATGGTAGTCTTGACGAGGCGCTTCATTACACTTCGACTTGATGAAAGAATCAGGATTTTCAGCAAATTTAGTTGTGTTATCAACCCTACTAATGTAAGGCTGGGACATGGAAGCAGTAAAGTCCATCTTCTAGCAGATGACATGGAAGTTGGTCTTGATTTAGTTGCATGTAATAGTATGATCAATGCGTTTGCCAAACTCGGCTTGTACCCGAAGCCAAGCTGGCTTTTGAAATTTTGA 879 0.4596 MAATLLRNRSTSSVFNLFTNALRRFSSAQVGNTIPDEARERMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYCLVQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHNRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWVDQARDLTVEMQEMGFKGHSSTFSAVIGCLDLQNMVVLTRRFITLRLDERIRIFSKFSCVINPTNVRLGHGSSKVHLLADDMEVGLDLVACNSMINAFAKLGLYPKPSWLLKF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0752 292 Gene3D - 45 121 IPR014722 -
Psa6g0752 292 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Psa6g0752 292 PANTHER RIBOSOMAL PROTEIN L2 43 182 IPR002171 GO:0003735|GO:0005840|GO:0006412
Psa6g0752 292 SUPERFAMILY Translation proteins SH3-like domain 51 169 IPR008991 -
Psa6g0752 292 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa6g0752 292 MobiDBLite consensus disorder prediction 153 175 - -
Psa6g0752 292 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 43 182 - -
Psa6g0752 292 Gene3D Ribosomal protein L2, domain 3 122 193 IPR014726 -
Psa6g0752 292 Pfam Ribosomal Proteins L2, C-terminal domain 51 168 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0752 Psa-Chr6 26571991 26573888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0752 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.167 4.72e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0752 - - gmx:100792418 288.5