Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0747 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCGTATTCGAGCAACAATAATAACAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCGATAATTACGTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCGCAGTCGCGAGAGTGCCCGGTGTGTAAGGCGATGGTTGAGGAGGAGAAATTGGTTCCTTTGTACGGGAGAGGAAAAACGTCAACTGATCCGAGATCAAAGTCTATTCCTGGTGTTAATATCCCTCATCGTCCTGCCGGACAGAGACCTGAGACTGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGGTTTGGATTCGCAGGAGGGTTGGGGGGATTGGGAGGATTTGCACCTGCAGCAACTACAAGATTTGGAAATTTCACTTTTTCTGCAGGATTCGGTGGTTTTATACCATCTTTATTTAACTTTCAGATGCATGGGTTTCATGGCGGGGCCATGTATGGTGGAGCAGCTGGTTTCCCTTACGGGTTTTCTAATTCATTTCACGGTGGTCATGTTCATAGATATCCTCTGCCCACAGGTCCAGGACAACAAGATTATTATCTGAAGAGGCTGCTGCTGATTATTATTTTTTGTGTGGTACTTGCTTTCATTCGTCAATAG 699 0.4564 MASGFGESTSRSPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFAGGLGGLGGFAPAATTRFGNFTFSAGFGGFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPLPTGPGQQDYYLKRLLLIIIFCVVLAFIRQ* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0747 232 MobiDBLite consensus disorder prediction 88 120 - -
Psa6g0747 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Psa6g0747 232 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Psa6g0747 232 CDD RING-HC_AtRMA_like 30 74 - -
Psa6g0747 232 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g0747 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa6g0747 232 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Psa6g0747 232 PANTHER OS12G0636000 PROTEIN 2 230 - -
Psa6g0747 232 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Psa6g0747 232 SUPERFAMILY RING/U-box 29 85 - -
Psa6g0747 232 SMART ring_2 32 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0747 Psa-Chr6 26450043 26452948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0747 30 215 C3H Transcription Factor Family AT1G19310 67.358 3.00e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0747 K10666 - gmx:100527488 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0747 6 26450043 26452948 Psa6g0747 6 26450043 26452948 ECH