Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0714 ATGAAAATGATGAAGCATGTGTTAACGGTTACTGCATTAACCATGGTGGTAGGAATAGTTGCACTCGCAGCTGATTCAGAACCAAAAACCTGCAACGAGATTCGCACTTGTGGAGATGCAGATATTCCATACCCTTTTGGCATATACAACAACAACCCGGACTGTTTCTCGGGTAGAAGATTAATTAAGCTCAACTGCACTGATAAATTCAAAATTCTTGCGGGTAACATACCGGTATTAAACATAAACCCCTCCGCATCTCAAATTGAAGTGTTGTTAACTGTCTCCAGGTATTGTGGCAAGGATGATAATAATATACCCAAACTTACCATAAGTTCTTATACCATTTCAAGCAAAGATAACAAGTTCCTAACCGTTGGTAATAACAGTTTCGGTTATCTTAACACTTACAGAGATGGAAACCATAACTACTCAACAGGGTGTTTAACAAGATCTTTCGGTGATCCAAGATCGATTGATAATGGAACATGTTCGGGTATAGGGTGTTGCCAAGTTGATATTCCTCCTCAAATGAGGCATATAAGTATAGAAGCTGAAAATTTTAATCGATCTTCGAAATCTTGTAGCTATTCATTTGTTGTCAAGAATGGTAACTATACTTTTTCTTCCACTCATTTATCACAAGGTTTCCCTAAGAAACTACCTGTCATTTTTGACTGGACCATTGGTAAGGAAAACTGCACTTCTGCCAAGAATAATGGAGCCAATTATGGGTGCAAGAACAATAGCAAATGTGATGACAAGGACACAGATTATGGTTATCGATGCAAATGCAATCCAGGCTATAAAGGAAATCCTTATCATCCCATTGGCTGCACAGACATCAACGAATGTGATAACCACACACATAAATGCCACACTAAAGCAAAATGTACAAACACTGATGGGAATTACACATGTTCCTGTCCAAAGGGGTCTTCTGGAGATGGAACATTGAATGGAGGGTGTCAACGAAATGCAAATAGAATAGTACTACCTACTGTCCTTGGAGCAGGAGCAGTATTTATTGTTCTGTTTGTGATGATAATTTTCTATTTAATAAACCAAAAAAGGAAACTTACCAAATTGAAAGAGAAATTCTATAAGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTAGTCAAAGACAAGACTCATCATCATCTCAAATAGCTCATATTTTCAAAGAAAATGAATTAAGGAAAGCCACAAACAACTTTGATGAGAGCTTAATCATAGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGGGAACTAAAAGATAATAGAATTGTTGCTATCAAAAAGTCCAAATCAATAGACGAAAACCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCGAATAAATCACAGGAATGTGGTTAAACTCTTGGGATGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTACGAATTTGTTAGCAATGGTACCCTTTCTGATTTTATACGCACAGAAATAGGTAAGGTGAATAATGTATCTTGGAAAACCCGTCTTAAGATCGCAGCAGAGCCTTTTAGTTTTGGTAGGGCGGAAGACAGAAGAAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAAATGACAGTGTGCATGAAGTTATTCATGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTTGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGAAAGTAGCTACGGAATTGGAGAGAATAATGGACAAGCACTCTTGTATCAACGAAGACATAAACGACGAGGAGAGTCGCTACTTGCTTCATGAATCATCTTCTAGCAGTTATGAACTTGGTGATAGCAGCAAACAAGGAGATTGTGGGTATGACAGCTTGAAAAATCTTGTATTGATTAAGTTGGATGATGGAAGATGA 1932 0.3789 MKMMKHVLTVTALTMVVGIVALAADSEPKTCNEIRTCGDADIPYPFGIYNNNPDCFSGRRLIKLNCTDKFKILAGNIPVLNINPSASQIEVLLTVSRYCGKDDNNIPKLTISSYTISSKDNKFLTVGNNSFGYLNTYRDGNHNYSTGCLTRSFGDPRSIDNGTCSGIGCCQVDIPPQMRHISIEAENFNRSSKSCSYSFVVKNGNYTFSSTHLSQGFPKKLPVIFDWTIGKENCTSAKNNGANYGCKNNSKCDDKDTDYGYRCKCNPGYKGNPYHPIGCTDINECDNHTHKCHTKAKCTNTDGNYTCSCPKGSSGDGTLNGGCQRNANRIVLPTVLGAGAVFIVLFVMIIFYLINQKRKLTKLKEKFYKQNGGSILEQKLSQRQDSSSSQIAHIFKENELRKATNNFDESLIIGRGGFGTVFKGELKDNRIVAIKKSKSIDENQIEQFINEVDVVSRINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIRTEIGKVNNVSWKTRLKIAAEPFSFGRAEDRRSLAMHFLSCLKNDSVHEVIHDGMWNEENKQEIKEVAVLAAKCLRLRGEERPSMKKVATELERIMDKHSCINEDINDEESRYLLHESSSSSYELGDSSKQGDCGYDSLKNLVLIKLDDGR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0714 643 ProSitePatterns Calcium-binding EGF-like domain signature. 281 307 IPR018097 GO:0005509
Psa6g0714 643 Pfam Protein tyrosine and serine/threonine kinase 412 510 IPR001245 GO:0004672|GO:0006468
Psa6g0714 643 SUPERFAMILY EGF/Laminin 281 316 - -
Psa6g0714 643 Pfam EGF domain 285 318 IPR024731 -
Psa6g0714 643 SMART egf_5 233 280 IPR000742 -
Psa6g0714 643 SMART egf_5 284 324 IPR000742 -
Psa6g0714 643 CDD EGF_CA 281 316 - -
Psa6g0714 643 Gene3D Laminin 232 284 - -
Psa6g0714 643 SUPERFAMILY Protein kinase-like (PK-like) 383 512 IPR011009 -
Psa6g0714 643 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 298 309 IPR000152 -
Psa6g0714 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 513 IPR045274 GO:0007166
Psa6g0714 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 515 611 IPR045274 GO:0007166
Psa6g0714 643 SMART egfca_6 281 324 IPR001881 GO:0005509
Psa6g0714 643 Gene3D Transferase(Phosphotransferase) domain 1 512 612 - -
Psa6g0714 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 18 513 - -
Psa6g0714 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 515 611 - -
Psa6g0714 643 Gene3D Phosphorylase Kinase; domain 1 370 482 - -
Psa6g0714 643 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Psa6g0714 643 ProSiteProfiles Protein kinase domain profile. 407 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0714 643 Pfam Wall-associated kinase 162 266 IPR013695 GO:0004674|GO:0016021
Psa6g0714 643 CDD EGF 242 274 - -
Psa6g0714 643 Pfam Wall-associated receptor kinase galacturonan-binding 31 91 IPR025287 GO:0030247
Psa6g0714 643 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Psa6g0714 643 Gene3D Laminin 285 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0714 Psa-Chr6 24996418 25000227 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0714 517 643 Receptor kinase-like Gene Family AT1G21230 37.692 2.31e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa6g0714 PK_Tyr_Ser-Thr 9.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0714 - - mtr:MTR_1g010260 653.669