Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0712 ATGAGTTCTTCAAAGAAAGAAGAAGAAAGAGTTGAAAGAATAATCAGAGGTCTTTTAAAACTTCCTGAAAATAGAAGATGCATCAATTGCAATGCCTTGGGACCACAATATGTTTGTACAACATTCTCAACATTTGTCTGCATAAATTGCAGTGGTTTACATCGAGAGTTCACGCATAGAGTAAAATCGGTATCAATGGCGAAATTCACTCCCGAAGAAGTCACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTCAAAGGATGGGATCCTATGCGACATTCGTATCCCGATTCTAGTAATATGCACAGACTTAGAGATTTTATCAAGCATGTCTATGTGGAAAGAAAATATACCGGCGAAATAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAGGAGGAGTCCCATGAAAGTAAGAAGAGTAGTTCGTTTCGTTTAGAGTTGGTAACTCCTAAGTCAAGTCCCGGTGCAAGAAACAGTCCAAGTGCAATCGAGGACGCGAGTTTGAGATATGTATATGATGAAAGCCGAAGTCCTAAGTATGTACGAAAGTATTCAAGATTTGGAGGATTAAGCAAAAGTCCTATGAAGTTTGAGGTCGTTGATGATAGGTTTCGGGACGAAGATTATAGAAACCGCAGGCAATCGAATCTAGATTCAAAGCTAGGACAACTTTCATTTGATGGTCGTAAGAGTGTGGACAGATCCCAAGCACCAGTTCAAAGATCTTCGGGTGAAATCACGACGAAGAATGACTCATCTTTACAAGTAACAACTTCTGGCGGAGAAGGTTCTATTGAGAAAAAGCCGTCGGAGAAAATAAGTCATAAACCAAGAAGCTTAAATGATTTGAGTCCGAAGTCTCAAGCTTCTGAAACCGCTATTGTTGCTGTACAAGAAACACCAAGCATGACGATGGAAAGTGAAAGCAATTGGGCCTCATTCGAAACATCTACCGAGGAAAATGTTCCTAAGACTCCAAACACAAACACCATTAAATCTTGCGCAACGGAACCAACACCTAAAGCAAAAACTTCAAGTCATTTAGACCTTTTACTTCTTGAATTATCAGGTCCTTTTAGTGACAATGTTCCAACAACTTCAACGGTAGAAAAAGCCTCTACATTGGATTTTCCATCTACTTCAATGGAGCAGACCACTGCATCATGTTCTGAGACGGCACAACCTTCTAACGAAGCTCCTCCGCCACAATCTGAGCTGCATGAAACAGAAGACTCCGTTGAAGTTTCACGAGGAGATAGACCACAGATAGAAAATCCCATTGAAGTTTCACATGCACATGAACCACCAAGCATGCAAAATTCTCCTTCTGTTTCAGTTGGTTGTAGTTCAACAACATCACCTATAAAATCACCAAACAATGTAGTTTCAAATAATGAGCCATCATTTTCTCCTAATACACATGAAACATCACACGCTTTTGACGAACTATCTTCTCGAACCACCTCAAATCCTACTCAAAACACCAAACCTGATGTCGGCTCCAAGCCTAGTACGACAAAAACCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTACTACAAGCTACTTATCTGGTCCCGCACCAAATGCAGGTTGGAAGAATGTTCAACATCCTGTCATGGGATATGACAATAGTATGCAGTATTATCCTAATGCACCAAAACCCATGAACCCTTTTGAAGTAACTGAAGGGAGAAGTATAGCGCACACATCATCGTCTCCGACTCTGGCGTCAACGTATGGTGTGCTACCCGATGTATCACATAGAACAGGACTAATGTATACTTCAAGTCTTGGTTCTTTAGACACAATGGTGCCTTATTCCGCAAGTTATGCATCCCCGGTTACTGGTGAGTGCTTTGATCAAGTTAATAATGAAGAGCAACTTATTAGATCACAAAGATTTGATACATTCAATGGCGGCATAACTCGTTTTTCATCTCTTGATAACATTCAACAATCGCATGGAGGATATGGAATGCATGGAAGTCCAAATTCTTTTTCCAATACAGGAGGAAATCCATTTGCATAG 2064 0.4041 MSSSKKEEERVERIIRGLLKLPENRRCINCNALGPQYVCTTFSTFVCINCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPMRHSYPDSSNMHRLRDFIKHVYVERKYTGEISQENLPRIKLNDKEESHESKKSSSFRLELVTPKSSPGARNSPSAIEDASLRYVYDESRSPKYVRKYSRFGGLSKSPMKFEVVDDRFRDEDYRNRRQSNLDSKLGQLSFDGRKSVDRSQAPVQRSSGEITTKNDSSLQVTTSGGEGSIEKKPSEKISHKPRSLNDLSPKSQASETAIVAVQETPSMTMESESNWASFETSTEENVPKTPNTNTIKSCATEPTPKAKTSSHLDLLLLELSGPFSDNVPTTSTVEKASTLDFPSTSMEQTTASCSETAQPSNEAPPPQSELHETEDSVEVSRGDRPQIENPIEVSHAHEPPSMQNSPSVSVGCSSTTSPIKSPNNVVSNNEPSFSPNTHETSHAFDELSSRTTSNPTQNTKPDVGSKPSTTKTKSSGRMELPEDLFTTSYLSGPAPNAGWKNVQHPVMGYDNSMQYYPNAPKPMNPFEVTEGRSIAHTSSSPTLASTYGVLPDVSHRTGLMYTSSLGSLDTMVPYSASYASPVTGECFDQVNNEEQLIRSQRFDTFNGGITRFSSLDNIQQSHGGYGMHGSPNSFSNTGGNPFA* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0712 687 MobiDBLite consensus disorder prediction 380 523 - -
Psa6g0712 687 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
Psa6g0712 687 MobiDBLite consensus disorder prediction 668 687 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 288 350 - -
Psa6g0712 687 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 686 - -
Psa6g0712 687 CDD ArfGap_AGFG 12 122 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 243 272 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 134 169 - -
Psa6g0712 687 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Psa6g0712 687 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Psa6g0712 687 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Psa6g0712 687 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Psa6g0712 687 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Psa6g0712 687 MobiDBLite consensus disorder prediction 380 411 - -
Psa6g0712 687 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Psa6g0712 687 MobiDBLite consensus disorder prediction 134 150 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 151 168 - -
Psa6g0712 687 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Psa6g0712 687 MobiDBLite consensus disorder prediction 273 287 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 442 519 - -
Psa6g0712 687 MobiDBLite consensus disorder prediction 222 350 - -
Psa6g0712 687 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
Psa6g0712 687 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0712 Psa-Chr6 24925339 24929467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0712 12 117 C2H2 Transcription Factor Family AT4G05330 36.036 5.24e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0712 - - cam:101499268 966.066