Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0707 ATGATGGAACGGCCCGTGACCTTCAACGATAGTCATCATATTATAGAAATAGCTGGGAGTGTCGAGGCTTCTACATCTTCCTCGTCTCGTGATAGACATTTTAATGGTGTAGACGAGTCGCATCGTGAAGAAAGAATAAGTGGCACGCGGTTGGCTGTTGGTCAGCCTTCAGTTTCCACCTCGGGCATATCGAATGGGTCAAATAGTAGGAGTTCTTCATTAGTAAGAAGGGGGGACGCTCGTCGGAGTAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAACTAGTCCTCTTAGTAAGCCAGATTGTTGCGTCTATAGTTGTTTTGTCATTGTCGAGGAATGAGCATCCACGTACCCCGTTGTTTCAGTGGATAGTGGGTTATGCTTCTGGATGTGTTGCTACACTCCCTCTTCTTTATTGGCGGTATTATAATCATAACCATATGCGAGAACAAGACTCAGCTCAAACACGTCAAACATCTCCTCGGGTTAGTGATCCTTCTGGGACATTTCTCTCGATTTCCAGAAATAATGGAGGAGATGATGGTCAGGCAGCTGCTGCATCTTCAAGAAGCAATCAAACTTCACTATTGATGAATAGAAGAATGAAAATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTGTGGATCTTTGGGGGACGATCATCTGTTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTGCATTTAGCTGCATCGGCTATGCGATGCCTTTCATTCTCTGTTCAACCATCTGCTGCTGTCTCCCGTGTATAATTTCCATTCTTGGTGTTAGAGAGGATCTGACACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCGCTGCCAGTTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGTGAAAACAACAATGGTAATATAGAAGGTGGAGTTGTGGCTGCAGGAACTGCAAAAGAGCGTGTGATCTCTGGTGAAGATGCGGTTTGCTGCATCTGCCTTGCAAAGTATGAAAATAATGACGAGCTTAGAGAACTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCACTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAAACCCAACAGGATTAGGGTCTGGAGAAGATGCCACCCAAACAACAGGATGA 1218 0.4319 MMERPVTFNDSHHIIEIAGSVEASTSSSSRDRHFNGVDESHREERISGTRLAVGQPSVSTSGISNGSNSRSSSLVRRGDARRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRNEHPRTPLFQWIVGYASGCVATLPLLYWRYYNHNHMREQDSAQTRQTSPRVSDPSGTFLSISRNNGGDDGQAAAASSRSNQTSLLMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSVDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPVYKFKMKKNKRSGENNNGNIEGGVVAAGTAKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENPTGLGSGEDATQTTG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0707 405 MobiDBLite consensus disorder prediction 32 48 - -
Psa6g0707 405 Pfam Ring finger domain 343 384 IPR001841 -
Psa6g0707 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 405 - -
Psa6g0707 405 MobiDBLite consensus disorder prediction 52 74 - -
Psa6g0707 405 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Psa6g0707 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 391 IPR013083 -
Psa6g0707 405 SUPERFAMILY RING/U-box 333 390 - -
Psa6g0707 405 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 2 405 - -
Psa6g0707 405 MobiDBLite consensus disorder prediction 20 81 - -
Psa6g0707 405 SMART ring_2 343 383 IPR001841 -
Psa6g0707 405 CDD RING-H2_RNF111_like 342 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0707 Psa-Chr6 24591955 24598533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0707 76 390 C3H Transcription Factor Family AT1G80400 58.125 1.87e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0707 - - gmx:100785559 634.409