Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0702 ATGTCTCAGACTAACTGGGAGGCTGATAAGATGTTGGATGTTTACATCCATGATTATCTTGTGAAGAGGGATTTGAAAGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCATCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATTGCTAGAACGAATGAGAAGCATTCGGAAGTTGCCGCGTCTTATATCGAGACACAGTTAATTAAGGCTAGGGAGCAGCAACAGCAACAACAACAGAATCAGCCACAACCTCAGCAGTCACAACACCAACAACAGCAGAATCAACAACAGCAGCATATGCAGATGCAACAAATGCTGTTACAGAGGCAGCATCAACAGCAGCAACAACAGCAGCAACAGCAACAACAACATCAGCAGCAACAACAGCAGCAACCACAGCATCAACAGCAGCAACAACAGCAGCAGCAACAGCAGGGTAGGGATAGGGCTCATCTCCTGAACGGTGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCAATTGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCGATGAAGCAAAGATTTGGAGACCAAATCTTGGACCCAAATCATGCCTCGATTTTGAAGTCATCCGCAGCTACTGGCCAACCGTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAATTCAAGCTCGTAATCAGCAACTACCAGGGTCTACTCCGGATATAAAAACCGAGATTAATCCTGTTTTAAACCCTAGAGTTGCGGGTCCTGAATCGTTGATGGCAATTCCTGGATCAAATCAAGGCGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTATACTTCAGCCACAAAAACCTTTCATACAGAATCCACAGCCTTTTCATCAACTTCCAATGTTGACTCCGCAACATCAACAACAACTTATGTTAGCACAGCAAAACCTGGCATCACCATCTGCCAGTGATGAAAGTAGAAGACTCAGAATGCTACTGAACAATAGGAATATGGGGGTAGGTAAGGACGGCCTTTCAAATCCTGTCGGTGATGTAGTATCGAATGTTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGCTGATACGGATATGCTAATGAAGATGAAACTGGCTCAGTTACAACACCAACAGCAGCAGAATGCTAATCCACAGCAGCAGCAACTTCAACAGCATTCTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTCGGGGGAGGTGGTGGCAGTGTCACCGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACCGGAAGAAAGAGAAAGCAACCCGTTTCTTCTTCCGGTCCTGCCAATAGCTCAGGAACAGCTAACACAGCAGGTCCTTCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCATACCCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAATGGTAGTTCTTCTAAACCATTAATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCCAACCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTCGTTGAGGATGCGTCTCTTGATGATAACGTTGAGTCTTTTTTATCTCATGATGATAATGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAGTTCTGTCCGTGCAAGCACAAGCAAAGTTGTTTGTACTCATTTCTCTTCCGACGGAAAATTGCTTGCAAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCTTTAATTACTGATGTCCGTTTCAGTCCAACTCTGCCTCGTCTTGCAACTTCTTCCTATGACAAAACTGTCCGCGTTTGGGATGTTGACAATCCCGGGTATTCGCTTCGTACCTTCACTGGTCATTCTGCATCTGTTATGTCACTAGACTTTCACCCTAATAAAGAGGACCTTATCTGCTCTTGTGACTTCGATGGCGAGATAAGATATTGGAGTATTAACAATGGAAGTTGTGCTAGAGTGTCAAAGGGTGGCACTGCACAAATGAGATTTCAACCTCGGCTGGGGAGATACCTTGCTGCAGCTGCAGAGAACGTCGTCTCTATACTCGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCGATACATTCCGTATGTTGGGATCCATCCGGGGAGTTCTTGGCATCTGTCAGCGAGGACTCTGTCAGGGTTTGGACTCTCGGAACTGGAAGTGAAGGGGAATGTGTTCACGAGCTTAGCTGTAACGGAAATAAGTTTCACTCGTGCGTTTTCCATCCAACGTACTCATCGCTGCTGGTCATTGGATGTTACCAGTCATTGGAGCTGTGGAACATGACAGAGAACAAGACGATGACTCTGTCTGCTCACGACGGTCTAATTGCTGCTCTGGCCGTTTCAACTGTAAACGGTCTGGTTGCTTCAGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2703 0.4569 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQNQPQPQQSQHQQQQNQQQQHMQMQQMLLQRQHQQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQIQARNQQLPGSTPDIKTEINPVLNPRVAGPESLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGILQPQKPFIQNPQPFHQLPMLTPQHQQQLMLAQQNLASPSASDESRRLRMLLNNRNMGVGKDGLSNPVGDVVSNVGSPLQAGGPPFPRADTDMLMKMKLAQLQHQQQQNANPQQQQLQQHSLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDASLDDNVESFLSHDDNDPRDPVGRMDVSKGFTFSEVSSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPTLPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 900 - -
Psa6g0702 900 MobiDBLite consensus disorder prediction 89 125 - -
Psa6g0702 900 SMART WD40_4 694 734 IPR001680 GO:0005515
Psa6g0702 900 SMART WD40_4 861 900 IPR001680 GO:0005515
Psa6g0702 900 SMART WD40_4 820 859 IPR001680 GO:0005515
Psa6g0702 900 SMART WD40_4 609 648 IPR001680 GO:0005515
Psa6g0702 900 SMART WD40_4 651 690 IPR001680 GO:0005515
Psa6g0702 900 SMART WD40_4 776 814 IPR001680 GO:0005515
Psa6g0702 900 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 900 IPR044716 GO:0003714
Psa6g0702 900 MobiDBLite consensus disorder prediction 414 450 - -
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Psa6g0702 900 MobiDBLite consensus disorder prediction 414 520 - -
Psa6g0702 900 MobiDBLite consensus disorder prediction 141 164 - -
Psa6g0702 900 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Psa6g0702 900 SUPERFAMILY WD40 repeat-like 611 900 IPR036322 GO:0005515
Psa6g0702 900 MobiDBLite consensus disorder prediction 461 520 - -
Psa6g0702 900 Gene3D - 751 900 IPR015943 GO:0005515
Psa6g0702 900 Gene3D - 598 750 IPR015943 GO:0005515
Psa6g0702 900 Pfam LisH 10 36 IPR006594 GO:0005515
Psa6g0702 900 SMART Lish 8 40 IPR006594 GO:0005515
Psa6g0702 900 Pfam WD domain, G-beta repeat 615 647 IPR001680 GO:0005515
Psa6g0702 900 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Psa6g0702 900 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Psa6g0702 900 Pfam WD domain, G-beta repeat 779 813 IPR001680 GO:0005515
Psa6g0702 900 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 900 IPR001680 GO:0005515
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Psa6g0702 900 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 900 - -
Psa6g0702 900 CDD WD40 612 900 - -
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 657 IPR001680 GO:0005515
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Psa6g0702 900 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Psa6g0702 900 Coils Coil 118 146 - -
Psa6g0702 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0702 Psa-Chr6 24284623 24292248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0702 695 899 Miscellaneous Gene Families AT5G08390 25.714 1.77e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa6g0702 WD40 0.048 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0702 - - gmx:100779972 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0702 6 24284623 24292248 Psa6g0702 6 24284623 24292248 ECH