Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0684 ATGGATTCTCCAGAACCTTCTCAGATCAACAACACTCCTTCTCTCTCCACTCTCAATCCCACCAACACTCCTTCTGATGAATCTCCTCAAGTTCAAGAATCTCCTTTTTTAAGATTTGTCAACACACTTTCTCCAATACAGCCTGTCAAGGCTTCTCATGCGACACATGGGTTTCTTGGACTCAATTCTCCACCTCTTGTATTCAAATCGCCGCGTATTAGCGATCACCACCGTGAGACACAATGCTCGGAAAGGCCTGATGAAACCCATTTATCTGGTGGAGAAATGTGTCAAGATGACACTGGAGACAACTGTCTTGGTGAAACTCATGGTGATTTGAAAAAATTGAATCCTCAGCAGCCACTGTCAGAGGGATTTACAACAGACGCTCAGAATGATGTGAATACCCAAAGCTGCAGTCCTCCACCATCTGTCGATGAATATTTGGCTGATCCCGGGGATGATCAAATGTATCCTGTCAACCTAGAAATGGAACAGTCTACTGATGCAGTTGGGTCATCACTAACTGAGTCAGAGAAAGTTATATTAGAATCTGATAGGAGTGATGGTCCTGCTAACAGAGCAGAAAAACTTTTGCCTTTGTTAGAGGAATCTAATACGGTTCATCATGAAAGGCCAGCATATTCTGAAAATCTTGCAATAATGGAAGGAGAGAAAGATGGTGCTGAATGGGTTTCTCAAGAGCACACAAATTTAGACTCCAGTCCAGGCGCAGATATTTTTGATAAACAACATTCTCATGATTCACTTCCCCAGTGTGCAGGAAATGATCAACGGCATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATCCAGGATATTAAAGAATTTGAAAATTGCAATGAGACGGTGTCAACCTCTCAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGGCTAGTCTAAAGCATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCTCTTGGCAGTAATAAATCTCATGTGAAATTAAATGTAATTTCACGCAACATGAATATGCTTCCTGTGACGGCTTCCAAGCCACCGGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAGTGCCCCTTAGTTGTCCTTCTTCATCTACTGGGGTGAGATTATCAGATGGTTTACAAGGGATGCACTCCAAATCTTCTATAACTTTGCATAAAGTGGAAAATGTTACAAGATCCTCAATTCCGACCGATATGGACGGTCAATCATTTATTGATACTAGAAATGAGAGCCATGAAACTGACGCCTCAGTAGCCGCAGATTATTTCATTTCCGAATCTCCTACCATGACAGAGTCCATTGACCTATATCCGGAAAGCACATGTGATAAGAGAAGAGTAAGCCCTACAAGCATCGAGAATACAGAGGAATTCAATCATCCTAACACCTCCAAGAAAAAGAAGAAAACAAATACTGATGATGCGGGTGGCCCTAAGGGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGCGCCGGCCTCTTCTGTGGCGACGGTTGTGCTTGCGATAGCTGTGGTAATAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCACCATATTGAATCCCGTAATCCAGATGCATTTGCTCCCAAGATTGTAAAGTGTGCGGCCGATGTTCCACAAAATAATATGGAAGATGTGAATATGACAACGCCGGCATCAGCTAGGCACAAACGAGGTTGCAATTGCAAAAGGTCAATGTGTACTAAAAAATATTGTGAATGTTTTCAGTCTAAAGTTGGATGCTCAAGTGGATGTCGATGTGATGGATGTAAGAATGCCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTTGAGCAAAGAAAGGGAGAACAACATTGTTGAAGAAGCGTTAGATGACAAACTGCACAATAGACCAAAAATGGTGACAATCAGGACAGGCTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCGTTGTTGCAATGCTCCGACCAAGGCAAGCAGGGTGCAAAGTCTAGACTTGCTTCCGCAGACTGGACTAAATCTTCCAAAAATTCACGGAGTAATCTTGCACATACAGAAACAAACGACTCTCAAAAGAATGCACCTACATGTGCTTCATCTAAAGAAAGTGAGTGGATAGATCTTCCACCATACCAACTCTCCAACAGATGTGGTATTCGCCAGTTATCCGGGGGTTCTCTTCGTTGGCGCGGTAGTTCACCAATTACTCCAAGCATTAACTTAGATGATGAACCAGATAGCAAGCTCTTTGACATTCTAGAAGATGAAACACCTGATATACTGAAAGAAGCTTCAACTCCCACCAAGTCTGTGAAAGCAAATTCTCCACTCCAAAAGAGAGTTTCTCCTCCACAGAGTCATCTACTTCGGATTGGATCAAGCTCTTCAGGAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCCGTTCCTTCTTTTCCACCGCTGACACCTTGTGCTGATTCAAAGGTCCTTTGCACTGGCAAGGAAGATTCAAGTAACAGTGCAGAGAAAATGACATAA 2592 0.4255 MDSPEPSQINNTPSLSTLNPTNTPSDESPQVQESPFLRFVNTLSPIQPVKASHATHGFLGLNSPPLVFKSPRISDHHRETQCSERPDETHLSGGEMCQDDTGDNCLGETHGDLKKLNPQQPLSEGFTTDAQNDVNTQSCSPPPSVDEYLADPGDDQMYPVNLEMEQSTDAVGSSLTESEKVILESDRSDGPANRAEKLLPLLEESNTVHHERPAYSENLAIMEGEKDGAEWVSQEHTNLDSSPGADIFDKQHSHDSLPQCAGNDQRHHSDCTPQLMPDPIQDIKEFENCNETVSTSQVNSENIPQDGSEASLKHHGIRRRCLQFGEAASLGSNKSHVKLNVISRNMNMLPVTASKPPGIGLHLNSIINAVPLSCPSSSTGVRLSDGLQGMHSKSSITLHKVENVTRSSIPTDMDGQSFIDTRNESHETDASVAADYFISESPTMTESIDLYPESTCDKRRVSPTSIENTEEFNHPNTSKKKKKTNTDDAGGPKGCNCKKSKCLKLYCDCFGAGLFCGDGCACDSCGNRVEFQETVVETKHHIESRNPDAFAPKIVKCAADVPQNNMEDVNMTTPASARHKRGCNCKRSMCTKKYCECFQSKVGCSSGCRCDGCKNAFGKREDFVAMEHALSKERENNIVEEALDDKLHNRPKMVTIRTGLLRPANHLSPVTPLLQCSDQGKQGAKSRLASADWTKSSKNSRSNLAHTETNDSQKNAPTCASSKESEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSINLDDEPDSKLFDILEDETPDILKEASTPTKSVKANSPLQKRVSPPQSHLLRIGSSSSGGGLKSGRKFILQSVPSFPPLTPCADSKVLCTGKEDSSNSAEKMT* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0684 863 MobiDBLite consensus disorder prediction 1 35 - -
Psa6g0684 863 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 847 IPR044522 GO:0003700
Psa6g0684 863 MobiDBLite consensus disorder prediction 687 724 - -
Psa6g0684 863 MobiDBLite consensus disorder prediction 787 823 - -
Psa6g0684 863 SMART CXC_2 490 531 IPR033467 -
Psa6g0684 863 SMART CXC_2 578 619 IPR033467 -
Psa6g0684 863 MobiDBLite consensus disorder prediction 787 822 - -
Psa6g0684 863 ProSiteProfiles CRC domain profile. 491 618 IPR005172 -
Psa6g0684 863 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 847 - -
Psa6g0684 863 MobiDBLite consensus disorder prediction 687 722 - -
Psa6g0684 863 MobiDBLite consensus disorder prediction 459 485 - -
Psa6g0684 863 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 493 528 IPR005172 -
Psa6g0684 863 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 581 616 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0684 Psa-Chr6 23203114 23210447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0684 303 841 CPP Transcription Factor Family AT3G22780 32.364 8.55e-59 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa6g0684 TCR 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0684 K21776 - gmx:547664 788.489