Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0656 ATGACGATGAAGCTTCTTCTCATGTTTATCATGTTTCATATGTTCATCCTTATTCTCCACAAACCCATTTTGATTCTTGCTTCAGTTGTTCCCTCACCTCAAGTTTCACCCTTTCCTCCAATTCTCCCTTCAATGACAATGATTGCTTCCTCTCCAGGTATTCATGTGGGAGTTGAAGATGAAAAAATGGATTCACACAACAAAAAGGTAAAAGCTTTTGTGGTAGCTAGCACTGCACTTAGTGCTATCATTTTGTGTCTGTTAAGCTTCTGGATTTACTACATCATAAATGCTTCAAAACCCAACAGGAAGAAAAACCTTCAAAACTCAGATTCTGAGAAAGGACTTGGTTTTGCACCAATTTTGAGTAAATTCAATTCTGTGAAGAAGGTTGGTAAGAAAGGGTGTGTTCCAATCATTGACTATGAGCAAATAGAAAAAGGCACTGAAAATTTCAAGGAAAGTAACATCTTAGGTGAAGGTGGTTTTGGATGTGTTTACAAGGCTAGTTTGGATGATAATTTGGTGGTTGCAATCAAGAGGTTGAACTGTGAATGTCAATACGCAGAAAGAGAGTATGAGAATGAGGTGGAATTGTTAAGTGAAATTCAACATCCAAATGTAATTTCTCTACTTGGTTGTGGAACTCATGAGGATTCAAGGTTTATTATCTATGAGTTGATGCAAAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTCTGCATTGACATGGCACATGAGAATGAAGATTGCTCTTGACACAGCAAGAGGCTTAAAGTATCTGCATGAGCACTGTTACCCTGCAGTGATCCATAGAGATCTGAAGTCTTCTAATATTCTCTTAGATGCAAACTTCAGTGCCAAGCTTTCTGATTTTGGTCTCGCAATAATTGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGGACATTGGGGTATGTAGCACCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTCTATGCTTTTGGAGTTGTGCTTCTTGAGCTTCTATTAGGAAGGAAGCCTGTGGAAAAACTGAGTTCATCTCAATGCCAATCTATTGTCACATGGGCAATGCCACAGCTCACAGACAGATCTAAACTTCCAAACATTGTGGATAATGTGATTAAGAATACAATGGATCCTAAACACTTATTCCAGGTTGCTGCAGTGGCTGTGTTATGCGTGCAACCAGAGCCATGTTACCGCCCGCTGATTGCAGATGTTCTACACTCCCTTATCCCTCTTGTACCTGTTGAGCTTGGAGGAACTCTCCGAGTTTCACACATGACTCAGCAACCTCCAAATTCTAGTTAA 1344 0.3951 MTMKLLLMFIMFHMFILILHKPILILASVVPSPQVSPFPPILPSMTMIASSPGIHVGVEDEKMDSHNKKVKAFVVASTALSAIILCLLSFWIYYIINASKPNRKKNLQNSDSEKGLGFAPILSKFNSVKKVGKKGCVPIIDYEQIEKGTENFKESNILGEGGFGCVYKASLDDNLVVAIKRLNCECQYAEREYENEVELLSEIQHPNVISLLGCGTHEDSRFIIYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDANFSAKLSDFGLAIIDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLSSSQCQSIVTWAMPQLTDRSKLPNIVDNVIKNTMDPKHLFQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSHMTQQPPNSS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0656 447 SMART serkin_6 152 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0656 447 ProSitePatterns Protein kinases ATP-binding region signature. 158 180 IPR017441 GO:0005524
Psa6g0656 447 Gene3D Phosphorylase Kinase; domain 1 121 227 - -
Psa6g0656 447 Gene3D Transferase(Phosphotransferase) domain 1 228 427 - -
Psa6g0656 447 Pfam Protein kinase domain 153 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0656 447 PANTHER OS01G0750732 PROTEIN 27 442 - -
Psa6g0656 447 Coils Coil 179 199 - -
Psa6g0656 447 SUPERFAMILY Protein kinase-like (PK-like) 134 422 IPR011009 -
Psa6g0656 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Psa6g0656 447 ProSiteProfiles Protein kinase domain profile. 152 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0656 447 PANTHER BNAA04G14780D PROTEIN 27 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0656 Psa-Chr6 22279806 22282472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0656 27 368 Receptor kinase-like Gene Family AT1G80640 47.399 3.05e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Psa6g0656 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0656 - - gmx:100812044 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0656 6 22279806 22282472 Psa6g0656 6 22279806 22282472 ECH