Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0650 ATGGCTTATCACAACCAGCATCTTTCACAAGAGATACCAATCCACCATTTCACAGACCAATCTAACAACAACACTTTTCGTTCCATATTACCCGACTCGCCCGACCCTAACTCCAAACCTGATTCCGATCCCAACCAACTCCAAACCACACCTAATTGGCTCAACAACGCCATCCTTCGTACGCACTACACCGACAACAATAACAACAACAACAATAACGACGTTAACAACGACAACACCACCAACGATAACGGTAACGGACCTTCTAATTTCCTCAACCTCCAAACGGCGTCCGACTCCGTTCCAAACTCCGGCCAATGGCTCGCACGCTCGATTCTCCACCGGCACCACGGTGAAGTCATCGACGACGTCACCGATGTACAAGATTTAGATGATTTGAAAGGCGACGGAGGAGTAAGTAAAGGGGACGCGGTGGTGGTCGGAGACGGGATGGTGAACTGGCAGACGGGGAGATGGAAGGCGGAGATTATGTCGCATCCGTTGTATGAACAGTTGTTGTCGGCACATGTGGCGTGTTTGAGGATTGCGACGCCGGTGGACCAGTTGCCGAGGATTGATGCTCAGTTGGCCCAATCTCAGAATGTGGTCGAGAAATACTCCGCGTTCGGCCAGAACATCGTCGGCGTAGACGACAAAGAACTCGACCACTTCATGTCACACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTAATGGCTTGTTGGGAGATAGAACAATCCTTACAAAGTTTAACAGGAGTTTCACCTGGAGAAGGTACGGGGGCGACAATGTCTGACGACGAAGATGAACAAGTAGATAGCGATGCAAATATGTTTGATGGTAGTTTTGATGGCGGTGGAGATAACATGGGATTTGGCCCTCTTATACCTACAGAGAATGAAAGGTCTTTAATGGAGCGCGTAAGGCAAGAGCTAAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTAGACATAAGAGAGGAAATTCTACGCAAGAGACGAGCCGGGAAACTTCCCGGTGACACAACCTCTGTCCTTAAGGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACTGAGGAAGATAAGGCAAGGTTGGTTCAAGAAACTGGATTACAACTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGCGAAATTGGCACAGCAATCCTTCGACTTCGACTGTATTGAAGAGCAAGCGCAAAAGGTCTCAAAACTAG 1275 0.4706 MAYHNQHLSQEIPIHHFTDQSNNNTFRSILPDSPDPNSKPDSDPNQLQTTPNWLNNAILRTHYTDNNNNNNNNDVNNDNTTNDNGNGPSNFLNLQTASDSVPNSGQWLARSILHRHHGEVIDDVTDVQDLDDLKGDGGVSKGDAVVVGDGMVNWQTGRWKAEIMSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVEKYSAFGQNIVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANMFDGSFDGGGDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0650 424 SMART KNOX2_2 210 266 IPR005541 GO:0003677|GO:0005634
Psa6g0650 424 Gene3D - 343 417 - -
Psa6g0650 424 ProSiteProfiles ELK domain profile. 324 344 IPR005539 GO:0003677
Psa6g0650 424 SMART ELK_2 324 345 IPR005539 GO:0003677
Psa6g0650 424 SMART KNOX1_2 157 201 IPR005540 GO:0003677|GO:0005634
Psa6g0650 424 SUPERFAMILY Homeodomain-like 346 409 IPR009057 -
Psa6g0650 424 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 38 422 - -
Psa6g0650 424 ProSiteProfiles 'Homeobox' domain profile. 344 407 IPR001356 GO:0003677
Psa6g0650 424 Pfam ELK domain 324 345 IPR005539 GO:0003677
Psa6g0650 424 CDD homeodomain 347 408 IPR001356 GO:0003677
Psa6g0650 424 Pfam KNOX2 domain 217 265 IPR005541 GO:0003677|GO:0005634
Psa6g0650 424 SMART HOX_1 346 411 IPR001356 GO:0003677
Psa6g0650 424 Pfam KNOX1 domain 160 200 IPR005540 GO:0003677|GO:0005634
Psa6g0650 424 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 422 - -
Psa6g0650 424 Pfam Homeobox KN domain 364 403 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0650 Psa-Chr6 22063036 22066670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0650 1 421 Homeobox Transcription Factor Family AT5G25220 67.580 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Psa6g0650 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0650 - - cam:101494477 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0650 6 22063036 22066670 Psa6g0650 6 22063036 22066670 ECH