Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0643 ATGAAGCACTTTTCTTTCTTTCTTTCTATATTTCTCTATGTATACTTTTCTCATGCTCCAAACACAACTTCTGCAGCAACCTTAACATTACAAAACCAAACTGATTATCAAGCATTGCTCCAATTCAAACACTCAATAAACAAGGACCCAAATGGAGTCCTTGACTCTTGGAATTCTTCCACGCACTTCTGCAACTGGCATGGAGTCACATGCAACGCCATGCATCAAAGAGTGACAAACTTGAACTTACAAGGAAACAGTTTACATGGAACACTTTCACCTCACATTGGAAACCTCTCTCGTTTAAGAAACATCAACCTCGAAAACAATAGTTTCATCGAAAAAATACCACGCGAGCTCGGTCGGTTGGTAAGACTACATCAACTCTCTTTGAGCAATAACATGTTTTCAGGAGACATTCCTGAGAGCTTGTCCAATTGCTCCAATCTTAAAGTCTTGCGTTTGCTTAACAACAATCTCACCGGTAAAATACCAACCGAAATTGCCTTTCTTCGAAAGCTTCTCGTAGTAAACATCGGAAAAAACCATTTAACCGGAGAGGTTCCTTCTTTCATAGGTAACCTTTCTTCCTTGATAAGTCTTGGTCTTGCTTTCAACAGCTTAGAGAGAGATGTTCCACAAGAAATATGTCTGCTAAGAAACTTGAGAACTATAGAAGTTGTCGCGAACAAATTATCGGGTATGTTTCCGCCTTGTTTTTATAATATGTCATCTCTTGAATCGATCTCAGCTACTCAGAATCACTTCCGCGGTTCTCTTCCGTCGAATATGTTCCAAACACTACCTAATCTTCAAGTTTTTAAAATTGGAGTGAATCGATTCTCAGGCACGATCCCAACTTCCATTGCAAATGCTTCTAATTTGACATCATTTGACATTGGTGCAAACCATTTTGTTGGACAAGTTCCAAGTCTAGGGAAGCTACGAGATCTTCATTTGTTAAACCTCGAGTTCAACATTCTAGGTGACAATTCAAGTAATAATTTAGATTTTTTGAAAACATTGACAAATTGTAGTAAGTTACAAGCTCTTAGTATAGCTGCTAATAATTTAGGAGGTTTTCTCCCAAATTCTATAGGCAATTTATCCTACAACCTTAGTGAACTATACCTTGGGGGTAATGAGATATCAGGAAAAGTTCCTAAAGAGTTAGGAAATCTAGTAAACTTAATCCTCTTGAGCTTGGGACATAACCACTTTGAAGGAACTATTCCAACAAGTTTTGGACAGTTCAAGAACATGCAACTGTTAGATTTGCGCGAAAACAAGTTGTCGGGAGAAATACCGTTTTTCATAGGCAATCTCAGTCAGTTGTCTGATCTGTGGATGGAAGAAAACATGTTAGAAGGAAATATTCCTTTGAGTATAGGGAAGTGTCAAAAGTTGCAATTTCTAAACCTTTCACAAAACAATCTTCGAGGAACCATACCTTTAGAACTTTTTCGAATTTCGTCTTTAACAAAAGGATTGGACTTATCACGCAATTCATTGAGTGGTAGTTTACCTGACGAAGTCGGTTTCTTGAAAAATATTGGTAAGCTAGATGTGTCTGAAAATCGTCTGTCAGGTGACATACCGATAACCATTTGCGAATGCGTAAGCTTAGAGTACCTTCGTTTACAAGGCAACTCTTTTCGCGGAACCTTACCTTCCAAATTGTCATCTCTCAAAAGTCTTAAATATTTAGACTTGTCGAGAAATCAATTGTCGGGATCGATTCCTATAGACTTGCAGAATATTCCTCTTCTAGAATACTTGAATGTATCTTTCAACAAGTTGGAAGGAGAGGTTCCAATCAAAGGTGTCTTTCAAAATGCAAGTCGGTTAGGAGTGACAGGAAATAATAAGCTTTGTGGAGGAGTTTCAGAGTTGCATCTATCACCATGCCATGTCAACCGGATAGCTGTGATCATCAGTGTGATTGTTTTCCTTCTTATATTATTGTTTGCTCTAACCATGTACATGATGAGGAAAAGAAACAGAAAACCATCTTTTGATACACCGACAATTCACCAACTAGATAAGGTTTCATACCAAGAACTACATCAAGGAACGGACGGGTTCTCAGAGAGAAACTTGATTGGATCGGGAAGTTTTGGTTCTGTATACAAAGGAAATCTTGCATCACAAGGTAAAGTTGTTGCAATAAAGGTTCTGAACCTTAAAAAGAAAGGAGCGCATAAGAGTTTTATCGCGGAATGTAATGCACTAAAAAATATCAGACATCGAAACTTGGTCAAGATTTTAACATGTTGTTCTAGTACTGATTATAGAGGTGAAGAATTTAAGGCTTTAGTTTTTGATTATATGAAAAATGGAAGCTTAGAAGACTGGCTTCATCATCCAACGACAGCGAATTCAGAACATCCAAGAATGTTGAGCCTTGTTCAAAGATTAAATATCATGATTGATATTGGTTATGCATTACATTATCTTCATCGTGAATGTGAGCAATTAGTCCTTCACTGTGATATAAAGCCGAGCAACATCCTTCTCGACGAAGACATGGTTGCTCATGTGAGCGATTTTGGCATAACAAAACTTGTCTCAACCATTGATAATGCATCTTATAAGGAAACTAGTACTGTCAGAATAAAAGGGACCATTGGTTATGCTCCTCCAGAGTATGGAATGAGTTCTGAAGTATCGAGCTGCGGTGACATGTATAGCTTTGGAATACTCGTGTTGGAAATGATTACTGGAAGACGACCTACGGATGAAATGTTTGAAGATGGTCTAAATCTACATACATTTGTTGAGAATTCATTTCATGGTAGTATTATGCAGATTTTGGATCCAAATCTTGTACCAAGAGGTGAAGAGGCAACAGTAGAGAAGTGCTTAGTTTCAGTTCTAAGGATTGGACTTGCTTGTTCAATGGAATCACCCAAAGATAGAATGAACATAGTAGATGTTATTAAAGAGTTAGATATAATCAAAAAGGTCTTTCTTGATGGTGAGATAAACTAA 2991 0.3751 MKHFSFFLSIFLYVYFSHAPNTTSAATLTLQNQTDYQALLQFKHSINKDPNGVLDSWNSSTHFCNWHGVTCNAMHQRVTNLNLQGNSLHGTLSPHIGNLSRLRNINLENNSFIEKIPRELGRLVRLHQLSLSNNMFSGDIPESLSNCSNLKVLRLLNNNLTGKIPTEIAFLRKLLVVNIGKNHLTGEVPSFIGNLSSLISLGLAFNSLERDVPQEICLLRNLRTIEVVANKLSGMFPPCFYNMSSLESISATQNHFRGSLPSNMFQTLPNLQVFKIGVNRFSGTIPTSIANASNLTSFDIGANHFVGQVPSLGKLRDLHLLNLEFNILGDNSSNNLDFLKTLTNCSKLQALSIAANNLGGFLPNSIGNLSYNLSELYLGGNEISGKVPKELGNLVNLILLSLGHNHFEGTIPTSFGQFKNMQLLDLRENKLSGEIPFFIGNLSQLSDLWMEENMLEGNIPLSIGKCQKLQFLNLSQNNLRGTIPLELFRISSLTKGLDLSRNSLSGSLPDEVGFLKNIGKLDVSENRLSGDIPITICECVSLEYLRLQGNSFRGTLPSKLSSLKSLKYLDLSRNQLSGSIPIDLQNIPLLEYLNVSFNKLEGEVPIKGVFQNASRLGVTGNNKLCGGVSELHLSPCHVNRIAVIISVIVFLLILLFALTMYMMRKRNRKPSFDTPTIHQLDKVSYQELHQGTDGFSERNLIGSGSFGSVYKGNLASQGKVVAIKVLNLKKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYRGEEFKALVFDYMKNGSLEDWLHHPTTANSEHPRMLSLVQRLNIMIDIGYALHYLHRECEQLVLHCDIKPSNILLDEDMVAHVSDFGITKLVSTIDNASYKETSTVRIKGTIGYAPPEYGMSSEVSSCGDMYSFGILVLEMITGRRPTDEMFEDGLNLHTFVENSFHGSIMQILDPNLVPRGEEATVEKCLVSVLRIGLACSMESPKDRMNIVDVIKELDIIKKVFLDGEIN* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0643 996 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Psa6g0643 996 Pfam Leucine rich repeat 541 600 IPR001611 GO:0005515
Psa6g0643 996 SUPERFAMILY L domain-like 372 626 - -
Psa6g0643 996 SMART LRR_typ_2 466 490 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 195 219 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 563 586 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 394 417 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 515 539 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 243 267 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 587 612 IPR003591 -
Psa6g0643 996 SMART LRR_typ_2 99 123 IPR003591 -
Psa6g0643 996 SUPERFAMILY L domain-like 32 327 - -
Psa6g0643 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Psa6g0643 996 PRINTS Leucine-rich repeat signature 469 482 - -
Psa6g0643 996 PRINTS Leucine-rich repeat signature 563 576 - -
Psa6g0643 996 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Psa6g0643 996 Gene3D Ribonuclease Inhibitor 32 313 IPR032675 -
Psa6g0643 996 Gene3D Transferase(Phosphotransferase) domain 1 777 991 - -
Psa6g0643 996 Pfam Protein kinase domain 696 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0643 996 Gene3D Ribonuclease Inhibitor 327 641 IPR032675 -
Psa6g0643 996 SMART serkin_6 695 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0643 996 PANTHER OS04G0122200 PROTEIN 22 992 - -
Psa6g0643 996 ProSiteProfiles Protein kinase domain profile. 695 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0643 996 Gene3D Phosphorylase Kinase; domain 1 676 776 - -
Psa6g0643 996 SUPERFAMILY Protein kinase-like (PK-like) 668 983 IPR011009 -
Psa6g0643 996 PANTHER LRR RECEPTOR-LIKE KINASE 22 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0643 Psa-Chr6 21761835 21765175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0643 32 991 Receptor kinase-like Gene Family AT3G47570 45.066 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa6g0643 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0643 - - gmx:100785561 1199.88