Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0622 ATGGCAAACTATCACCGGAACAACGTCGGAAATCTCGTTCTCGGCCACCACCACCACCACGATCACCACTCCACCAAAACATCAACATTCTCCAACAACTTCCGCCAATGGAACTCCCTCTCAGTCGCATCAATCCGCCGTCTCATCTTCGACGCCGTCAGCTGCGGCGCTAGCTCCCGTTTCCATCACCGCCGCCGCAGCCTCGACGAATATGACACCGAAGACTTCTCTTCCACGACAAGATCAGACTCCTTTTCATCCAACGAGAAACATCAACAAAAACAACAGAATCAAAGTTCCAAACCGAATGCAAAGTCGGAGAAGCTATCGGATCTTCTGAACATGGCGGAGTTGGAGTCAGATGCAGAGGCGAAGAAAAAGGAAGAAGCTCTAGAAGAACTGAAACAGCTCGTGAAGGATTTGCATAACGAAGAGGATTCAGTTAAGCGGCGAGAAGCTGCAACCGCCGTGAGAATGCTCGCGAAAGAGAATTTGGAAGTTCGTGGAACGCTCGCTATGCTCGGAGCGATTCCACCTCTCGTCACAATGCTCGATTCACAAAACCTCGATTCTCAGATCGCTTCACTTTACGCGTTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTGTTGAATCTTCAGATGATACTGATTCTGCGGTTTCTGAAGCGGTTGTTGCAAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATCGGGTCGTCTGCTGCTATACCGTTTTTAGTTAGAACCCTTCGGAGTTTAGATAAGAAAGATAGTAGCAATCAAGCTAAGCAGGATGTTCTTAGAGCACTTTACAATCTTTCAATCTTTCCAGCAAATATTCTATTCATTTTGGAAACTGATTTGGTTCCTTTTCTGATAAACTCGATTGGCGATATGGAAGTAACGGAAAGAAACCTCTCTATCCTTAGCAATTTGGTGTCAAGTAGAGCAGGTAGAAAAGCGATAAGTGCTGTCCCTGATGTGTTTCCTATATTGGTTGATGTATTGAATTGGACTGATTCGCCTGAATGCCAGGAAAAGGTTTCGTATGTTTTGATGGTTATGTCGCATAAATCTTATGGTGATAAGCAGGCCATGATTGAGGCAGGGGTTGTGTCGTCCCTTCTTGAGTTGTCGCTTATTGGTACTACTCTGTCTCAGAATCGGGCTTCAAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAAGTTTCAGGTAACTATGGCGGAGGAAATTTAGGCACAGCAGTCTCTGCCCCAATTTGCGGAACTTCATCATCATGTGCAAAACCAGATGGAGGAGGAGGAGGAAAAGAGTGTTCGGAAGAAGACGAAGATATGATGAGCGACGAAAAGAAAGCAGTGAAGCAATTAGTCCAATTGAGTTTGCAAAACAACATGAGAAAAATCGTCAAAAGGGCCAACTTGCCTCAAGATATCGTTCCATCAGATCATTTTAAGTCACTCACATCAAGTTCAACTTCGAAGAGTTTACCATTCTGA 1566 0.4432 MANYHRNNVGNLVLGHHHHHDHHSTKTSTFSNNFRQWNSLSVASIRRLIFDAVSCGASSRFHHRRRSLDEYDTEDFSSTTRSDSFSSNEKHQQKQQNQSSKPNAKSEKLSDLLNMAELESDAEAKKKEEALEELKQLVKDLHNEEDSVKRREAATAVRMLAKENLEVRGTLAMLGAIPPLVTMLDSQNLDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLVESSDDTDSAVSEAVVANFLGLSALDSNKPIIGSSAAIPFLVRTLRSLDKKDSSNQAKQDVLRALYNLSIFPANILFILETDLVPFLINSIGDMEVTERNLSILSNLVSSRAGRKAISAVPDVFPILVDVLNWTDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGVVSSLLELSLIGTTLSQNRASRLLESLRIDKGKQVSGNYGGGNLGTAVSAPICGTSSSCAKPDGGGGGKECSEEDEDMMSDEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0622 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 175 217 IPR000225 GO:0005515
Psa6g0622 521 Coils Coil 113 151 - -
Psa6g0622 521 MobiDBLite consensus disorder prediction 78 107 - -
Psa6g0622 521 MobiDBLite consensus disorder prediction 502 521 - -
Psa6g0622 521 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 521 - -
Psa6g0622 521 MobiDBLite consensus disorder prediction 505 521 - -
Psa6g0622 521 Gene3D - 278 427 IPR011989 -
Psa6g0622 521 MobiDBLite consensus disorder prediction 69 107 - -
Psa6g0622 521 Gene3D - 16 277 IPR011989 -
Psa6g0622 521 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 521 - -
Psa6g0622 521 SUPERFAMILY ARM repeat 133 417 IPR016024 -
Psa6g0622 521 SMART arm_5 250 295 IPR000225 GO:0005515
Psa6g0622 521 SMART arm_5 206 249 IPR000225 GO:0005515
Psa6g0622 521 SMART arm_5 296 334 IPR000225 GO:0005515
Psa6g0622 521 SMART arm_5 164 204 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0622 Psa-Chr6 21115577 21118922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0622 131 424 U-box Gene Family AT1G67530 30.233 3.87e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0622 - - mtr:MTR_1g014420 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0622 6 21115577 21118922 Psa5g0746 5 61377377 61379156 PCT