Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0621 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAAATCTGATCGCAAGCAATTTTATACTATAGACTTGTCAGATGATGATGATGATGATGATTTAATGCCCAGGAAAAGTCAGACAACTCAGGAGAAGTTTGAGAGGATTGTTAGAAGTGATGCAAAAGAGAACTCATGTCAAGCTTGTGGAGAGAGCGAAAATCTTCTGAGCTGTGAAACATGCACTTATTCTTTCCATCAAAGGTGTTTACTCTTTCCACAGAAAAGCTCCCATCTGGACAGCTGGATGTGCCCTGAATGTGTTAACCCACTTAATAATATTGATAAGATATTAGATTGTGATATGCGCCCTATTGTAGTAGCTGGCAAAAGTGATGCCAAAAATTTGGAATCAAAAGAAAGCTTGGCCAAACAATATCTTGTTAAGTGGAAGGGACTATCGTATTTGCACTGCAGATGGGTGCCAGAGGAAGAGTTTCTGAAAGCCTTCAAGAATTATCCTCGCTTAAAGACCAAAGTAAACAACTTTCATAGTCAAAAGGCACAAGTCAGACAATTGGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTGTTGTTGACCGAATACTTGCTTGCAGGGGAAATGATAATGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTCCTTACGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTTGTTCCAAGCAGAAATAGAGAGGTTCAATATATTTCAGTCTAGGACTAGGAAAATTTCTTATAGTAAACAAAAAAGCAGGGATAATGATGATGCTGAATTGATAAAGCGGCAGAAAGAATTTCAACAGTATGAACAAAGCCCCGAGTTTCTTTCAGGGGGGGCACTACATCCATATCAACTTGAGGGATTGAACTTTCTAAGATTCTCTTGGGCCAATGAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCTCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGCAACTTGGGCCCCTCAAATGAATGTTATTATGTATTGTGGATCTTCCCAAGCTCGTGGCATTATCAGAGAATATGAATTTTACTTTTCGAAGAATGAAACGAACAAGAAAGTTAAATCTAAAAAAACAGTTACTACAAACAAGTTGGAAAGCATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATAAACTTGGATACGACCTGGTTAAGACCTATAAAGTGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTCAAAAACAAGGATTCTAAATTGTTTTCTTCATTAAATCAATACTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGCAAGTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAGCAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCCTGACTGAGCTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAGAGAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGCCGTGGTGGAGCACAAATTTCTCTTAACAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCGTATATGTTGGAAGGAGTTGAACCAGATCTGAACGATGAAAAAGAAAAACACAAACAACTGCTGGAATCATCAGGGAAGTTGCAACTGTTAGACAAGCTGATGATGAAGCTTAAAGAGCAAGGGCACAGAGTCCTAATATATTCCCAATTTCAGAGCATGCTGGACAAGCTTGAACAATATTGTGTTTACAAGCATTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTAAGGATAGATCGATTTAATGCTAAAAATTCTTCAAGATTTTGTTTCCTTCTTTCTACTAGAGCTGGTGGAGTGGGAATAAACCTTGCAACGGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCACGCCGATCTACAGGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTACAGGCTTATAACACGAGGAACAATTGAAGAAAGAATGATGGAAATGACAAAGAAGAAAATGTTGTTAGAACACTTAGTGGTTGGGAGCATAAAGACTCAAAATTTTAAACAGGAGGAGTTGGATGATATCATAAGGTATGGGTCAAAGGAGTTATTTGCTGATGAGAATGATGCGGTGGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTGTTGAATCGCGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGAGGCTGATGAGGATGGGTTTCTGAAAGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGCTGAGGCTGCAGAAGAAAAAAGTGAAATAGAGGGTAAATTTTCTGTCAGCGGATCAGAAGGGAAAAGTTACTGGGAGGAATTGCTAAAAGACAGATATCAAGAGCATAAAGTTGAAGAGCATAATGTCTTGGGCAAAGGGAAACGAAACCGCACAAAATTTCTGATGGTTTCTTTTAAGGGCGAAAATTCTCGTCTAGAAGATGTAAGCTCTGACGGTGAGGATGACAATTATGAAGTGGCTCTTACTGATGGCGATTCAAATTCAACAGGAACTACTACTGCTAAAAGACCTTCCAAAAAGAAAGCTCGTACTGCAGATAACACAGACCCACTTCCTTTAATGGAAGGCGAAGGAAAATCACTAAGAGTACTTGGTTTTAGTCAAAGTCAGAGGGCTGCTTTCCTTCAAATATTAATGAGGTTTGGGGTCGGTGATTTTGATTGGAAGGAGTTTATTTCCAACATAAAGCAGAAGACTTATGAAGAAATCAAAGAGTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGAGATAAATGATTCCCCTACATTCTCAGATGGTGTTCCAAAAGAAGGATTACGAATACAAGATGTTCTTGTTAGAATTGCGGTTCTGCTATTGATAAAGGAAAAAGTGAAGTTTGCATCAGAAAATCCTGGCACTCCACTTTTTTCAGATGACATCTTGTCACGCAATATAGGCTTGAAAGTTACAAAGATGTGGAAGGAGGAGCATGATTTAGTCTTACTGCATTCAATTTTGAAGCATGGGTATGGAAAGTGGCCAGCTATTGTTGATGATATGGATCTGAATATTCTGATGGTCATCTGTGGGGAGTTAAACATTCCATTCATAAATGTACCAGTAGGACAAGTTGGCTCTCATATGCCAAATGGTGCAAATATGACAAATGCGGAATCCACCAGCAACCAGTCTAGGCAGAATAGCGGCAGCGTCATGGCAGTTAATGGGGCACATGGTTCTTGTGATGCTGGGAAGCAAGAAAAGTTGCATCAAGAGCCCTCTACGTTATGTCAATTTAGAGAAATGCAAAGAAAGCACACTGAGTTTATAAAAAAGAGGTTTCTTCTCTTAGAAAAGTGTATCAATTCTGAGTACCAAAAAGAATACAATGATGATATGAAAGCAAGGGAAGGGAACAATAAAGAACTAAAAAATGAACCTACGACTACAAATGTAGGAAGACACATATTCGGGGAGACTCACAGCCAAAAGATTGATCAACTGCGTCAATTAGAACCAATAACTTTTGAAGAAATCTGTGCTTCTGTTTGTGATGATAATCCAAATCGGTTGACATTATGTCATCTTTACAATGAGATGTGCGACGCTGTGGAGACAAATACTGCGAATTTAGTTCAAGCATCGCTGTCCAGAGAGCTGACAGAAGTCAATGCTATGAAGAATTTCCATCAACTAGCAACCATCTGTGATCATGTCAACAGAATTCTAACACCACAAAATCAAACCAATTCAGAGCCAATAGCAAATTCTGATATCAAACCAGATGTTGTATCACAGACTGAAGTTTTGGAGCCTGAGCCCAATTTCGTCATCCCTCAAGATGAAAGCAAATCTAGAGGTAATGGAGTCTGA 4146 0.3919 MSSLVERLRVKSDRKQFYTIDLSDDDDDDDLMPRKSQTTQEKFERIVRSDAKENSCQACGESENLLSCETCTYSFHQRCLLFPQKSSHLDSWMCPECVNPLNNIDKILDCDMRPIVVAGKSDAKNLESKESLAKQYLVKWKGLSYLHCRWVPEEEFLKAFKNYPRLKTKVNNFHSQKAQVRQLDEDFVAIRPEWTVVDRILACRGNDNEKEYLVKWKELPYDECHWELESDISLFQAEIERFNIFQSRTRKISYSKQKSRDNDDAELIKRQKEFQQYEQSPEFLSGGALHPYQLEGLNFLRFSWANETHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPQMNVIMYCGSSQARGIIREYEFYFSKNETNKKVKSKKTVTTNKLESIKFDVLLTSYEMINLDTTWLRPIKWECMIVDEGHRLKNKDSKLFSSLNQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEQQISRLHKMLAPHLLRRVKKDVLTELPPKKELIIRVELSSKQREYYKAILTRNYEILTRRGGAQISLNNVVMELRKLCCHPYMLEGVEPDLNDEKEKHKQLLESSGKLQLLDKLMMKLKEQGHRVLIYSQFQSMLDKLEQYCVYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGVGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMEMTKKKMLLEHLVVGSIKTQNFKQEELDDIIRYGSKELFADENDAVGKSRQIHYDDAAIDRLLNRDQVGDEEATLDEADEDGFLKAFKVANFEYIDEAEAAEEKSEIEGKFSVSGSEGKSYWEELLKDRYQEHKVEEHNVLGKGKRNRTKFLMVSFKGENSRLEDVSSDGEDDNYEVALTDGDSNSTGTTTAKRPSKKKARTADNTDPLPLMEGEGKSLRVLGFSQSQRAAFLQILMRFGVGDFDWKEFISNIKQKTYEEIKEYGTLFLSHIAEEINDSPTFSDGVPKEGLRIQDVLVRIAVLLLIKEKVKFASENPGTPLFSDDILSRNIGLKVTKMWKEEHDLVLLHSILKHGYGKWPAIVDDMDLNILMVICGELNIPFINVPVGQVGSHMPNGANMTNAESTSNQSRQNSGSVMAVNGAHGSCDAGKQEKLHQEPSTLCQFREMQRKHTEFIKKRFLLLEKCINSEYQKEYNDDMKAREGNNKELKNEPTTTNVGRHIFGETHSQKIDQLRQLEPITFEEICASVCDDNPNRLTLCHLYNEMCDAVETNTANLVQASLSRELTEVNAMKNFHQLATICDHVNRILTPQNQTNSEPIANSDIKPDVVSQTEVLEPEPNFVIPQDESKSRGNGV* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0621 1381 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 614 775 IPR001650 -
Psa6g0621 1381 ProSiteProfiles Zinc finger PHD-type profile. 53 100 IPR019787 -
Psa6g0621 1381 SMART helicmild6 640 724 IPR001650 -
Psa6g0621 1381 Gene3D - 102 177 - -
Psa6g0621 1381 SUPERFAMILY Chromo domain-like 185 243 IPR016197 -
Psa6g0621 1381 SMART DUF1086_2 920 1072 IPR009462 GO:0003677|GO:0006338
Psa6g0621 1381 SMART chromo_7 101 168 IPR000953 -
Psa6g0621 1381 SMART chromo_7 193 247 IPR000953 -
Psa6g0621 1381 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1057 - -
Psa6g0621 1381 SMART PHD_3 55 98 IPR001965 -
Psa6g0621 1381 Pfam Chromo (CHRromatin Organisation MOdifier) domain 196 243 IPR023780 -
Psa6g0621 1381 Pfam Chromo (CHRromatin Organisation MOdifier) domain 122 162 IPR023780 -
Psa6g0621 1381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 101 IPR013083 -
Psa6g0621 1381 Pfam SNF2-related domain 310 588 IPR000330 GO:0005524|GO:0140658
Psa6g0621 1381 Gene3D - 1039 1219 - -
Psa6g0621 1381 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 301 486 IPR014001 -
Psa6g0621 1381 SMART DUF1087_2 842 914 IPR009463 -
Psa6g0621 1381 MobiDBLite consensus disorder prediction 924 938 - -
Psa6g0621 1381 Pfam PHD-finger 56 99 IPR019787 -
Psa6g0621 1381 SMART ultradead3 285 497 IPR014001 -
Psa6g0621 1381 MobiDBLite consensus disorder prediction 922 954 - -
Psa6g0621 1381 MobiDBLite consensus disorder prediction 1361 1381 - -
Psa6g0621 1381 Pfam CHD subfamily II, DUF1087 842 895 IPR009463 -
Psa6g0621 1381 ProSiteProfiles Chromo and chromo shadow domain profile. 195 242 IPR000953 -
Psa6g0621 1381 CDD CD2_tandem 193 242 - -
Psa6g0621 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 782 IPR027417 -
Psa6g0621 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 521 IPR027417 -
Psa6g0621 1381 SUPERFAMILY Chromo domain-like 68 177 IPR016197 -
Psa6g0621 1381 Pfam Helicase conserved C-terminal domain 611 724 IPR001650 -
Psa6g0621 1381 CDD CD1_tandem 100 174 - -
Psa6g0621 1381 Coils Coil 1217 1237 - -
Psa6g0621 1381 Gene3D - 281 530 IPR038718 -
Psa6g0621 1381 Gene3D - 184 244 - -
Psa6g0621 1381 ProSitePatterns Zinc finger PHD-type signature. 56 97 IPR019786 -
Psa6g0621 1381 CDD SF2_C_SNF 600 735 - -
Psa6g0621 1381 Pfam CHD subfamily II, SANT-like domain 935 1069 IPR009462 GO:0003677|GO:0006338
Psa6g0621 1381 ProSiteProfiles Chromo and chromo shadow domain profile. 102 185 IPR000953 -
Psa6g0621 1381 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1057 - -
Psa6g0621 1381 Gene3D - 531 755 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0621 Psa-Chr6 21020682 21037801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0621 311 785 RAD5 or RAD16-like Gene Family AT1G02670 24.088 1.70e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g0621 SNF2_N 7.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0621 K11643 - gmx:100790230 1989.93