Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0619 ATGACTTTGGTGATGGATGAACATAAGATGAATGATAAATTTCCTATTGGAATGAGAGTTCTTGCTGTTGATGATGACAGAACTTGTCTCATGATTTTGGAGAAACTTCTCCTTAAGTGTCAATATCATGTAACCACGGCTCAAAATGCGATAACCGCGCTGAATTTGTTGAGAGAAAACAAAAAGAATTTCGACTTAGTAATCAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCAAATGATGATCCAAAGATGGTGATGAAAGGAATTACTCATGGAGCTTGTGATTATCTGCTGAAACCTGTTAGATTGAAGGAGGTGCAAATTATTTGGCAGCATGTGATTCGGAAGAAGAAAAGTAGCAAAAGAAGCAATTCAGATAGCGGAAATGGAATAGATTCGGCTGTCACGGGAAGTTCGGATCAAAATGCAAGGCCACATAGAAAAAGAAAGGATAAGAATGAAGATGAGGAGGAGGAGGAGAATGAAGATGATGATGATGACGATGAGGATCCATCAGCGCAGAAGAAGGCTCGAGTTGTTTGGAATGCTGAGTTGCACCGCTTGTTTGTTTCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAACTTACAAGGGAGAATGTTGCCAGCCATCTTCAGAAATATAGACTCTATCTAAAAAGAATTAGTTGTGGGGACAACCAACAAGCTAATATGTCAGCAGCCTTAGGAAATTCCGCAGATACATCCTATTTCAGAATGAATTCTCTCAATGGAGTTGGAGGACATTTGCCTACAATGAACGGCGGCTCTACGCAGTTTCACAACAATCCATTCAGACCCTTTCAATCTAGTGGTAATATGAGTAACAGATTGAACACACCTGCTAATGTCAATATTCACGGATCCTACCAACCAGCCATAACTCGCGCCAATCCAAACGATATTCAGAGAACTCCAATTCCTCCTGTAGGGCTTGATCAATTGCAACACAATAGAGGTATTAACATTAGTCCTATTCACAACATAACCAACAAATTTCCCGATTATAGATCAAAAGCACCGATGAGTTGCACTCCTTCTTCGGTTTTGGATATCTCAAACAATCCAATGATGATGGAATCAAACTCTTTTTCTTTCCCTTCACTTGAGAAAAGAAGATTCAATGATGTTTGGTCAAGCAATATGCAATTACCTGGAGTTACTAGTAACGCGCCATTTCAAGGTTGGGATAATAACCATAATAATCATGATGGAAATTACCATTCTAATAATGTAATTGGCTCTTCTGTGATTCCTGCTGTGAACGCCGTCGAACAAGAAGAAAACTTGGACTACAATTATTGTGATTCCTTACAAATGAGAGATAATCGTATCCCGGATTTAACTGAAGGGTCGTCGATGAAAGCACATCAAGTATATATGATGAACCAGATGAAGTCACAAAACAATGGAATCCCTAAGAATATCAGTTCACTCGAAGACGTCGTCAATGACATGGTTAAACAGAAACAGTTATATCCTTAG 1602 0.3889 MTLVMDEHKMNDKFPIGMRVLAVDDDRTCLMILEKLLLKCQYHVTTAQNAITALNLLRENKKNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGITHGACDYLLKPVRLKEVQIIWQHVIRKKKSSKRSNSDSGNGIDSAVTGSSDQNARPHRKRKDKNEDEEEEENEDDDDDDEDPSAQKKARVVWNAELHRLFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCGDNQQANMSAALGNSADTSYFRMNSLNGVGGHLPTMNGGSTQFHNNPFRPFQSSGNMSNRLNTPANVNIHGSYQPAITRANPNDIQRTPIPPVGLDQLQHNRGINISPIHNITNKFPDYRSKAPMSCTPSSVLDISNNPMMMESNSFSFPSLEKRRFNDVWSSNMQLPGVTSNAPFQGWDNNHNNHDGNYHSNNVIGSSVIPAVNAVEQEENLDYNYCDSLQMRDNRIPDLTEGSSMKAHQVYMMNQMKSQNNGIPKNISSLEDVVNDMVKQKQLYP* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0619 533 SUPERFAMILY CheY-like 17 141 IPR011006 -
Psa6g0619 533 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Psa6g0619 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Psa6g0619 533 CDD REC_typeB_ARR-like 20 134 - -
Psa6g0619 533 SMART REC_2 18 130 IPR001789 GO:0000160
Psa6g0619 533 Gene3D - 192 255 - -
Psa6g0619 533 MobiDBLite consensus disorder prediction 176 190 - -
Psa6g0619 533 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Psa6g0619 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 524 IPR045279 GO:0009736
Psa6g0619 533 MobiDBLite consensus disorder prediction 144 161 - -
Psa6g0619 533 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Psa6g0619 533 MobiDBLite consensus disorder prediction 139 195 - -
Psa6g0619 533 PIRSF RR_ARR_type-B 1 532 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa6g0619 533 Gene3D - 17 149 - -
Psa6g0619 533 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Psa6g0619 533 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Psa6g0619 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0619 Psa-Chr6 20993026 20996423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0619 12 530 Response Regulator Gene Family AT2G25180 42.024 3.92e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa6g0619 Response_reg 3.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0619 - K14491 cam:101500109 605.134