Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0610 ATGGACGAAAAGGTGAAAACTCTTGAATTAGAATTACAACATGTGAGAGAGGAGAACAATACTCTAAGATTCATGCTTGAAGTTATGAAGATCAAGTGCACAAATTTAGAATCACATCTTCAAGAGATCAACAAAGTAGAACACAAAGAGATCATAAGTTCAAATCAAATTGGGTTATTACTTAACTTTGATACAAGCAAAAGAGCAAGACTAGAGCACTTTCCAACAGCAAAAAAACCATTACAAGTATTTGTCAAAACTCATCCTAATGATGAAAGTTTGATGGTAAAAGATGGTTATCAATGGAGAAAGTATGGACAAAAAGTTACCAAAGATAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCAATGGCTCCAAGTTGCCCAGCAAAAAAGAAGGTGCAAAAAAGCTTACATGACAAGTCTATCATTGTTGCAACTTATGATGGAGAACACAACCATGGTGTCTCTAATGATTCATTCAAACCATCTTCATCCGCGCTTATTGATTCATCGATATCTAATATCAAAATTGAAGAATACGCAAGTTCGCTAATCAAAGATCATAACTTTACTGCGGTATTAGCTAAGGCAGTTGCAAAAACTATCACAGGTCAAGAGCATAAGCGACAAGGTCTAAATCTCAATTTAAATCTTTCAGGAGAGTGA 669 0.3513 MDEKVKTLELELQHVREENNTLRFMLEVMKIKCTNLESHLQEINKVEHKEIISSNQIGLLLNFDTSKRARLEHFPTAKKPLQVFVKTHPNDESLMVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKSLHDKSIIVATYDGEHNHGVSNDSFKPSSSALIDSSISNIKIEEYASSLIKDHNFTAVLAKAVAKTITGQEHKRQGLNLNLNLSGE* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0610 222 Gene3D WRKY domain 82 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g0610 222 PANTHER WRKY TRANSCRIPTION FACTOR 49 174 203 - -
Psa6g0610 222 PANTHER WRKY TRANSCRIPTION FACTOR 49 2 172 - -
Psa6g0610 222 ProSiteProfiles WRKY domain profile. 91 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0610 222 Pfam WRKY DNA -binding domain 97 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0610 222 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 172 IPR044810 GO:0003700
Psa6g0610 222 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 174 203 IPR044810 GO:0003700
Psa6g0610 222 SMART WRKY_cls 96 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0610 222 SUPERFAMILY WRKY DNA-binding domain 92 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0610 Psa-Chr6 20500044 20501728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0610 82 208 WRKY Transcription Factor Family AT1G80840 42.604 9.26e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g0610 WRKY 5.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0610 - - mtr:MTR_1g013790 337.035