Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0588 ATGTCTTCTCAAGAGCTTGATCATTGGAATAATGGTGTTCATTTTTTCAAGATTATTCTTGAAAGTATCCTCCAAGAAGAAAAACTGAGAGTTCCTATAAGTTTTGTGAGAAGGTATTGGAAAGGAATAGAAAACCCAGTTACCCTAAGGCTACCAAATATGATTCAAAAGAAAGTTTTTTGGGAGAAAAATAGTGATTATGATGTTTTGTTTTGCAAGGGTTGGAAAGAATTTGCAAATTATTTATCTATGGGTGATTCACAGCTTTTGGTCTTTCAATATCAAGAAAATTCTCTCTTTAATGTGATCGTATTCGGGAAAAACGGATTAGAAATTAAATATCCTCTCGTAGAGATTAGTGAAGATTCTATTGAGATTGAAGCTCGTAAAAATTCTTTGGGAATGATTGAAGATCCTTCACAAAAGAATGGAAAACCTTGTGATCTTATAGATGTGAACTATGAGGACAATGAAGATTTGAAGGAGAGAAGTAGGGTTTTGTATGACAAAGTGAAGAATACATTTCACTCTAATAAGGACTTCTTCATATGCATGATTCAAAAGACATACATTGAAAGAGATCTCTTGGGCATACCAATTGAATTTGGTAGGAAATTTTTGCGTGGATTACAAGGAAAAAATGTTACTCTTTTTGTTAATCCCAAGAAAACATGGATTGTTAATTTGAATCTCACTTCAAAGCATCAATATACACTAAGTGGTGGATGGAGAAAATTTCGTGTCGATAATAATGTAAAATTCGGCGATGTTTGTGTTCTTATATTTAATAAAAGCAAAGGAAAAATTTCATTTAAAGTTACTATTTTCTCTCTAGAAAATGACATGCGAAGGGAATAG 858 0.3205 MSSQELDHWNNGVHFFKIILESILQEEKLRVPISFVRRYWKGIENPVTLRLPNMIQKKVFWEKNSDYDVLFCKGWKEFANYLSMGDSQLLVFQYQENSLFNVIVFGKNGLEIKYPLVEISEDSIEIEARKNSLGMIEDPSQKNGKPCDLIDVNYEDNEDLKERSRVLYDKVKNTFHSNKDFFICMIQKTYIERDLLGIPIEFGRKFLRGLQGKNVTLFVNPKKTWIVNLNLTSKHQYTLSGGWRKFRVDNNVKFGDVCVLIFNKSKGKISFKVTIFSLENDMRRE* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0588 285 CDD B3_DNA 14 105 IPR003340 GO:0003677
Psa6g0588 285 CDD B3_DNA 181 277 IPR003340 GO:0003677
Psa6g0588 285 PANTHER B3 DOMAIN-CONTAINING 9 277 - -
Psa6g0588 285 ProSiteProfiles B3 DNA-binding domain profile. 181 279 IPR003340 GO:0003677
Psa6g0588 285 Gene3D - 161 280 IPR015300 -
Psa6g0588 285 Pfam B3 DNA binding domain 181 274 IPR003340 GO:0003677
Psa6g0588 285 SUPERFAMILY DNA-binding pseudobarrel domain 176 277 IPR015300 -
Psa6g0588 285 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Psa6g0588 285 SMART B3_2 15 108 IPR003340 GO:0003677
Psa6g0588 285 SMART B3_2 181 279 IPR003340 GO:0003677
Psa6g0588 285 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Psa6g0588 285 Gene3D - 9 109 IPR015300 -
Psa6g0588 285 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0588 Psa-Chr6 20125209 20126787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0588 15 130 B3 DNA Binding Superfamily AT4G01580 30.579 4.45e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g0588 B3 5.6e-12 CL0405