Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0587 ATGGCCACTAAGCTCTGTGATTCCTGCAAGTCAACAAAAGCAACACTATTCTGCCGTTCTGACTCAGCTTTCCTCTGTATCACCTGTGACTCCAACATCCACGCCGCCAACAAACTCGCCTCCCGCCATCACCGCGTCACACTCTGCGAAGTCTGTGAACAAGCTCCTGCTCACGTCACATGCAAAGCAGACGCCGCTGCTCTCTGCGTCTCCTGCGACCACGACATCCACTCCGCCAATCCCCTCGCTAGCCGCCACGAACGCATCCCGCTCAACACTTTCCACCACAACAGCAAGCAACAATTCTTCTCCGAATCCGATCCAGATGCTGACGTCAGCACCGAAGAAGCCGAAGCTGCTTCCTGGCTCCTCCAAACTCCCGCCAACCCTAAAGGCCCCGATCTCAACTCATCTCACTACTCATTCACCGAAATCGACGCTACCGACCTCAATTTCGTCTGTGTTGACGCCAAAACTGACTCGCCGGAGCAACATAGTCCCGGCACCGCAGACGGAGTTGTGCCGGTGCAGTCTCATAGCAAAACTGTCACCGAACACTACTCCGATATCAACAACGATTTCTCTACTTCTAAACCTTTTACTTACAACTACAATCACAGCGTATCGTCACCTTCGCTGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGTCGGAGATGTCATACTGCGGTTACGGAAGGACGGAGGCGGTGCAAATCACGGCGGCGGATAGAGAAGCTAGGGTTATGAGGTACAGAGAGAAGAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCAAAACGCACTGATTTGAATATGAATGTGAATCTAATCGGTGAGGATGAGTCTTATGATGGATACGGCGTCGTTCCTTCCTGTTGA 939 0.5112 MATKLCDSCKSTKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVTLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLASRHERIPLNTFHHNSKQQFFSESDPDADVSTEEAEAASWLLQTPANPKGPDLNSSHYSFTEIDATDLNFVCVDAKTDSPEQHSPGTADGVVPVQSHSKTVTEHYSDINNDFSTSKPFTYNYNHSVSSPSLEVGVVPDGNVMSEMSYCGYGRTEAVQITAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDLNMNVNLIGEDESYDGYGVVPSC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0587 312 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Psa6g0587 312 ProSiteProfiles CCT domain profile. 245 287 IPR010402 GO:0005515
Psa6g0587 312 SMART bboxneu5 49 91 IPR000315 GO:0008270
Psa6g0587 312 SMART bboxneu5 1 48 IPR000315 GO:0008270
Psa6g0587 312 CDD Bbox1_BBX-like 5 48 - -
Psa6g0587 312 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 3 1 311 - -
Psa6g0587 312 Pfam CCT motif 245 287 IPR010402 GO:0005515
Psa6g0587 312 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Psa6g0587 312 CDD Bbox1_BBX-like 48 91 - -
Psa6g0587 312 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Psa6g0587 312 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Psa6g0587 312 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 311 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0587 Psa-Chr6 20093622 20095774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0587 1 311 C2C2-CO-like Transcription Factor Family AT5G24930 52.459 3.62e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa6g0587 zf-B_box 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0587 - - cam:101512206 555.058