Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0561 ATGGCTTCCGAGGATTTAGTTAAACAAGAATTGGAAGAATTGCAGAAACAATTGGGGAAGAAGCAGAAATTTGAAGACGCTGTTTCATCTCTTAAATCTCTGCTTCAAACCACATATCCATCAGCTTCTACCTCTCTCCGTAAATCCTTTTATACTGTTATATGCCGAGTTGCTACCGTGTTGAAGACGAGATATACAGCACCCGGTTTCTGGAGTGCTGGGTTAGGGCTTTTTGAGCAGGCTATATTGTTTGTTTCCGAACCTTCTGAGAAGGAGCACTTGAAGGCCTGCATTGATCAGGCTAGGGAACATTTGCATCTAGGAGACGACGCTTCACAAACTCTGCGACCTGCAGAGACTCGTGAAAACAGAGGATATCTTTTTGAGGGGCACCTTACGGTAGATCAAGAGCCACCACAGCCTGAATGGTTGGTGCAGGAAAACCTCTTGACAGTCGCGGCTAGACTATTTGAAGCGGAATCCTCTCAAGGTTTAGCAACAAATGAAAACACGCCAGATGATGTTGCTAGTGTGCTTGAAATGCTTAGAAATAGATTGGAAGAAGTTGTGCCCCTGATGGAGAATGATGGTCATGTAGCTCCGAGAGTTCCTCCGGCAAGTAAAGACGTTGTGGCGAAACTTCCCGTCATTACTCTCACAGAGGAGATCCTTGCTAATATGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAAAATCTGGCATTAAACGACCAAATGCAAGAGTTACCGTGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCATGTCCAATCTGTCGTCATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGTGAAAAGGAAGCCGAAGAGGAGAGGAAAGGCGCTGCAAACGCCCTTCGGGGTGGTGAATTCATGTATGTTTAG 942 0.4618 MASEDLVKQELEELQKQLGKKQKFEDAVSSLKSLLQTTYPSASTSLRKSFYTVICRVATVLKTRYTAPGFWSAGLGLFEQAILFVSEPSEKEHLKACIDQAREHLHLGDDASQTLRPAETRENRGYLFEGHLTVDQEPPQPEWLVQENLLTVAARLFEAESSQGLATNENTPDDVASVLEMLRNRLEEVVPLMENDGHVAPRVPPASKDVVAKLPVITLTEEILANMGKDAECAICRENLALNDQMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREKEAEEERKGAANALRGGEFMYV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0561 313 Coils Coil 7 27 - -
Psa6g0561 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Psa6g0561 313 SMART ring_2 233 273 IPR001841 -
Psa6g0561 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 307 - -
Psa6g0561 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 7 307 - -
Psa6g0561 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 280 IPR013083 -
Psa6g0561 313 Pfam Ring finger domain 232 274 IPR001841 -
Psa6g0561 313 Coils Coil 284 304 - -
Psa6g0561 313 SUPERFAMILY RING/U-box 227 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0561 Psa-Chr6 18979453 18981515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0561 7 313 C3H Transcription Factor Family AT5G20910 61.889 4.75e-126 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0561 K16274 - gmx:100798732 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0561 6 18979453 18981515 Psa6g0561 6 18979453 18981515 ECH