Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0555 ATGAACACGCACATGGCTGGTTCTAATCCTACTAATATCATCCATGTTACCAACGATATTGATCACAATACATCTTGCTCCAACAATAACCCTACTAATACGAATAATAACAAGTTGTACAAAGGTGTGAGGAAGAGAAAATGGGGAAAATGGGTTTCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATTTGGTTAGGATCATATGACACACAAGAGAAAGCTGCAAGAGCATTTGATGCTGCCCTTTATTGTCTACGTGGTCCTCAAGCTAGTTTCAATTTCCCTAATACACCTCTTACCATCATCAATGTAGGTGTTGCTCATATTAACTCTCTTTCACCACAAGAGATTCAAGAGATTGCAGCTAGGTTTGCCAATGAGTACACGCCGCCGATGGAGTTGAGTAGTACTCATGAAGAAGAAGAAGAAGAAGATCAACAAGTACCATTGTTAGAGTCACAAAATGATGCTAATTCTAATTCTTATTCATGTCCTCTTTATGATAATGAAGGTGATTTGAGGAGGATGGATTGGACTTTTGAGGATATGTTGGATGAAATGAATGGAGTTGCTAATGGCTCTCATTTTGGTTATTATGGGATAGAAAAGATGCAATACTCGAGTGAGATACAATATTCTAATCAACTTTTTGAGGAGGATAGTGAAGATTCTTTTTCAAACCATTCTTTACTTTGGAGTTGGAACTTTTGA 714 0.3754 MNTHMAGSNPTNIIHVTNDIDHNTSCSNNNPTNTNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPQASFNFPNTPLTIINVGVAHINSLSPQEIQEIAARFANEYTPPMELSSTHEEEEEEDQQVPLLESQNDANSNSYSCPLYDNEGDLRRMDWTFEDMLDEMNGVANGSHFGYYGIEKMQYSSEIQYSNQLFEEDSEDSFSNHSLLWSWNF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0555 237 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Psa6g0555 237 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 23 237 - -
Psa6g0555 237 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Psa6g0555 237 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Psa6g0555 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0555 Psa-Chr6 18364197 18365136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0555 33 197 AP2-EREBP Transcription Factor Family AT1G74930 51.176 7.83e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g0555 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0555 - - mtr:MTR_1g014800 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0555 6 18364197 18365136 Psa6g0555 6 18364197 18365136 ECH