Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0551 ATGACAGAGAGAAATCCAGTAGCAGCAAATTCATCATCACCTGACAGTGATTTTAGCAACCAGCAATGGTCTTTTGAACTCTCTGACTACTTGAGTTTTGATGACATTGATTGGCAACATGTTGATCCCACCACATATAATCACTCTTTTGTTTATCAACCCAATGATGTAGCAGGTGGCAGCAACAACATTGAGGGGTCTTCTACTTCTAATCATACCAGGGATACAAATACTACAATGAGTGGAACAGCCCTAACCCAAGGTACATATTGGAAGAATGAAGTTAAGGAAAGAATTGCATTCAAAACAATGACAGAGATTGAAATACTTGATGATGGTTACAGATGGAGAAAGTATGGAAAGAAAATGGTCAAGAACAACCCTAATCCAAGGAATTATTATAGGTGTTCTGTGGAGGGATGTCCTGTAAAAAAGAGAGTTGAGAGGGATAATGATGATTCAAGATATGTCATAACAACCTATGAAGGCATGCACACACACCCAACTTCTTCATAG 516 0.3857 MTERNPVAANSSSPDSDFSNQQWSFELSDYLSFDDIDWQHVDPTTYNHSFVYQPNDVAGGSNNIEGSSTSNHTRDTNTTMSGTALTQGTYWKNEVKERIAFKTMTEIEILDDGYRWRKYGKKMVKNNPNPRNYYRCSVEGCPVKKRVERDNDDSRYVITTYEGMHTHPTSS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0551 171 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0551 171 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g0551 171 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 169 - -
Psa6g0551 171 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g0551 171 SUPERFAMILY WRKY DNA-binding domain 102 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g0551 171 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0551 171 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0551 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 169 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0551 Psa-Chr6 18231465 18232324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0551 47 167 WRKY Transcription Factor Family AT5G26170 55.469 3.33e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g0551 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0551 - - gmx:100796836 187.578