Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0550 ATGACAGAGAGAAATCCAGTAGCAGCAAATTCATCATCAACTGACAGTGATTTTAGCAATCAGCAACTGTCTTTCGAACTCTCTGACTACTTGAGTTTCGATGACATTGATTGGCAACATGTTGATCCCACCACATATAATCAATCGTTTGCTTATCAACCCAATGATGTAGCAGGTGGCAGCAACATTGAGTGGTCTTCTACTCATACCAGAGATACTAATAATATTAATAAGAGTGGAAGAGAGAATATTTGGAAGAATGAAGTTAAGGAAAGAGTTGCATTCAAAACAATGACAGAGATTGAAATACTTGATGATGGTTACAGATGGAGAAAGTATGGAAAGAAAATGGTCAAGAACAGCCCTAATCCAAGGAATTATTATAGGTGTTCTGTGGAGGGATGTCCTGTAAAAAAGAGAGTTGAGAGGGATAATGATGATTCAAGATATGTCATAACAACCTATGAAGGCATGCACACACACCCAACTTCTTCATAG 498 0.3775 MTERNPVAANSSSTDSDFSNQQLSFELSDYLSFDDIDWQHVDPTTYNQSFAYQPNDVAGGSNIEWSSTHTRDTNNINKSGRENIWKNEVKERVAFKTMTEIEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNDDSRYVITTYEGMHTHPTSS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0550 165 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0550 165 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 164 - -
Psa6g0550 165 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g0550 165 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0550 165 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g0550 165 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 164 IPR044810 GO:0003700
Psa6g0550 165 Gene3D WRKY domain 91 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g0550 165 SUPERFAMILY WRKY DNA-binding domain 96 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0550 Psa-Chr6 18221690 18222498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0550 47 161 WRKY Transcription Factor Family AT5G26170 56.349 7.45e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g0550 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0550 - - gmx:100796836 186.422