Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0547 ATGGAAGAGTTGTTGTATGTGGTTACCGTGCTATTACGAGTAGGTAACTTTGTCTGCGATAACTCGGTCATAGCTATACTCATGGATGTATCCAGATTTAAGGTAATGGCAGATGCAGGGTCGTTGTCTAATTCTGTAACTAAGGTTTCCACCGAGAATGTTGTAGGTTCGGACTATAGTCGTAATAGTGGTGGCAATTTGGATGTTGAAATAGGTGTTGCGGAAGTCACGCCACCGGAATTGGATATGGAAGGAGAAAATCTCATATCCCCAAATAAAAGTGATTTGGTTTCTAGTGATGTAGCGATGGTTCCAGAAAGCGAGGAGGATGATTCGTTATCATTGGAAGGTGAACAATTTATTGATAGCTCGTGTTCTCTATCGGTTGTCAGTGAGAACAGTAGTATAGGTGGAGAAGAGTTCATTGCTTCTGATGCTACTTCAGAAGTTGGGACACCGCGTTCGGTATACGTAGAGAAAACTGTCGGTCCTGTCAATATTGTTGCTCACGCCGCTGATTTGGGGGAGTCGAATGTTGACACGGATATCATGAGTGAATCTCTTGCCATGGCAGTGAGTCTTGACCAAGAGATTGGAGTTGGGTCGGACCATAAGCCTACTACAGTTGTTGTTGATCATCAGCTGCCTCAGGAAGAGGGAACGAGTGTAACCGTTGTCCGAAGTGTTTTTGAATTGGACTATACCCCGTTATGGGGATTCATATCGTTATGTGGAAGAAGACCTGAAATGGAAGACGCATTTGCAACTGTTCCTCAGTTTTTGAAGATTCCCATTCAGATGTTGATTGGTGATCGAGTACCTGACGGAATAAACCGTTGTTTTAGGCCGCAAATGACTCATTTCTTCGGAGTATATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGCGAACGCATCCATATGGCCTTGGCCGAGGAAATAGAATTCGTCAAGGAAGGTTTAATCAACGGAAGTACCGTGGATAGTTGCCAAGATCAGTGGAAAAAGGCATTCACCAACTGTTTCTTGAAGGTTGATGCTGAAGTTGGAGGAACAGCTAATAATGAAGCTGTTGCGCCAGAAACTGTCGGTTCCACTGCAGTTGTTGCTCTAATATGTTCATCTCATATCATAGTTGCAAATTGTGGCGATTCAAGAGCCGTTCTTTGCCGCGGCAAAGAACCAATGGCGTTATCAGTGGACCATAAACCGAACCGAGAAGATGAATATGCTAGAATTGAAGCAGCCGGAGGAAAAGTGATACAATGGAACGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGACAGATATTTGAAACCATGGATTATTCCGGAACCAGAAGTTCAATTCATTCCTCGTGCGAAAGAAGACGAATGTCTCATTCTAGCCAGCGACGGTCTATGGGATGTGATGACAAACGAAGAGGTCTGCGACCTAGCTCGAAAACGAATACTTCTCTGGTACAAGAAAAACGCCTCAGAACTACCCTCAGAAAGGGGAGACACGAGTGATCCCGCCGCACAAGCAGCAGCAGAGTTCCTCTCAAATCGCGCTCTTCAAAAAGGAAGCAAAGACAACATAACCGTGATAGTCGTGGATCTGAAACCTCAACGAAAGTATAAGAACAAGACATGA 1656 0.445 MEELLYVVTVLLRVGNFVCDNSVIAILMDVSRFKVMADAGSLSNSVTKVSTENVVGSDYSRNSGGNLDVEIGVAEVTPPELDMEGENLISPNKSDLVSSDVAMVPESEEDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDATSEVGTPRSVYVEKTVGPVNIVAHAADLGESNVDTDIMSESLAMAVSLDQEIGVGSDHKPTTVVVDHQLPQEEGTSVTVVRSVFELDYTPLWGFISLCGRRPEMEDAFATVPQFLKIPIQMLIGDRVPDGINRCFRPQMTHFFGVYDGHGGSQVANYCRERIHMALAEEIEFVKEGLINGSTVDSCQDQWKKAFTNCFLKVDAEVGGTANNEAVAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNASELPSERGDTSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKNKT* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0547 551 SMART PP2C_4 223 539 IPR001932 -
Psa6g0547 551 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 102 551 - -
Psa6g0547 551 SUPERFAMILY PP2C-like 223 543 IPR036457 -
Psa6g0547 551 CDD PP2Cc 242 541 IPR001932 -
Psa6g0547 551 Gene3D - 224 551 IPR036457 -
Psa6g0547 551 ProSitePatterns PPM-type phosphatase domain signature. 288 296 IPR000222 GO:0043169
Psa6g0547 551 ProSiteProfiles PPM-type phosphatase domain profile. 237 541 IPR001932 -
Psa6g0547 551 PANTHER ALPHABET, ISOFORM E-RELATED 102 551 - -
Psa6g0547 551 Pfam Protein phosphatase 2C 281 534 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0547 Psa-Chr6 18186937 18190195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0547 1 551 PP2C-type Phosphatase Gene Family AT1G17550 48.313 1.53e-165 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0547 K14497 - gmx:100805281 804.283