Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0544 ATGGTTTGTGAGATGGAGAGTGATTGTATTGAAGATATGATGGATATTGAAGTTTTACCATCAATGTGGCCAGAGGATGTTGGAACTGATGTTGGAAAACAGTTTAACATAGAGAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGCTTACAAATTATACAGAAAAAGGGTCATCTCAATTGGCTTATTTAATGCAACATTGGGAGTATAAACAGGCGAATGCGGTTCGACTTCTCCGAGAAGAGCTCGACAATCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATACTTAAAGATAATAATCGATTCGAGGAAGAGAGTTATGGTGGAGATAAACGACCGGTTTCGATATTGGACGATGTTTACTATACATGGCAAGATCTACCGGTTGCGATAAGGAAAAGTGATGTTGTTGTTCAAAACAAGAGAATTGAAATTGAGGCTGAGTATGATACTGTTGTTTACTGGAAACATCGGTCGCGTGATTTGGAAAAACAGTTGGAGGCAAGTATTCGGAGAGAGGAGATATTAAAGGAGAAATTACAAGAAAGTATAGAGACTATTGAAAGACAATCTTCACCAGTGGAGGAACTGTCGCAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAATCATTTTCCAAGCTTACAAGAGGAGGACATCATAGGAAAAACGGATGTCGAAATTTTCACGGGATCAGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAAGAAATTACTTTTGAGACAGAACTATTTGGAGCTAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAACCGGAGAAACAATTGGAGTGAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCTAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCTAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAAGTTGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAGATATAGCAGATGATATACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAGATTCTCACAAATTTAGTCAGCAATGCTGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTATGTTGTTCCAGAACCACCATTTGCCAAATCAGAAGAATGCCACCAAACGGCGACAGAAGACCAGTCAACTGTTTCTTCAAATGGATTGAAGGAAGAGAAACATACATCATCACCAAGAAGTACTAGATGTGATCAAAATCTTATTGATGGTAAAAAACACACTGACCAACCAATCCAGAATCAAACATTTAGCAATGAATGTAGTAGATCTTCAGTCAACAGTGAATGCTCAATGAATGATGATACTGAGGAGCAAACTCATTCAACTGAAACAACAGTGTGGATACGTTGCGATGTATTTGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGACCATGCTCGAAAATATGGAGGCACAGGTCTTGGATTAGCAATATGTAAACAACTGGTTGAGTTAATGGGGGGTCGCTTAACAGTAACGAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGATCCAGATGACCTTTCAGATGTTGATAATAATGAAGACGACACAACCGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCACTTTTCACTTCTAATGGATCCACCAGACCACACAGAATCTCCCACAAGTTCAATGGTTTTCCAGACAACGACTCTTACTCAAACCTCTCTAGTAACATCATTTCAAATGGAACAAGTTCAATTGAGGATGCATCTTCGGTTATTGTTAATGCTTTAGATATGTCTGAATCAACAAGTTCATCAAGTCACAGCTCAGAAACAAAGCATGAATGTTTAGTTAATGGAAACAAACAGAATCATGATAATGATAAGGCACATGCTATGTTAGAAAATGGTACCGCAAACTCTAGTCAATGTAAGGAAGCAGGTAGAGAAATGAATTTAGAAGCAAAGTCAAGTGAACCACAACAAACATGTCATGGTCAAGGGAAGGAAGATAGTACTAGTAGCACTAGCACATCATCAGAAGTAACCAAATCGACGTTAAAGCCGAATATTCTTCTCGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATAGCATGGATGTTGTGAATAATGGAGTTGAAGCCATACGCGAGGTTCAACGGCATTCTTATGACATAATCTTGATGGATGTTTACATGCCCGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTATGAGGAAACAGGCAATTGGGATGCTGCAAGAGAAGCTGGAATTGAACAAAGTTTATTGGCTTCAGATGATTGTTCTGTACTACCTAAAAAGCGGATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAAGAATGTTTCGCCAACGGTATGGACGCGTTTGTGTCGAAACCAGTGACACTCCTAAAATTGAAAGAGTGTCTTGAAAAGCATCTAAGTTCTGAAAAGAGTGCTGCAAAAAATAGCTACTATAGGACTAATTGGAGTGTGAATGTAGCAGTACAAAACCGTTTTCTAATAGGTTATGTATTGGAAGCTTTGACCATTGATCAATGA 3066 0.3816 MVCEMESDCIEDMMDIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTEKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNNRFEEESYGGDKRPVSILDDVYYTWQDLPVAIRKSDVVVQNKRIEIEAEYDTVVYWKHRSRDLEKQLEASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGVAAKKEITFETELFGAKTFLIYVEPVFSKTGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGDIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKSEECHQTATEDQSTVSSNGLKEEKHTSSPRSTRCDQNLIDGKKHTDQPIQNQTFSNECSRSSVNSECSMNDDTEEQTHSTETTVWIRCDVFDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTACDNSDDPDDLSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNDSYSNLSSNIISNGTSSIEDASSVIVNALDMSESTSSSSHSSETKHECLVNGNKQNHDNDKAHAMLENGTANSSQCKEAGREMNLEAKSSEPQQTCHGQGKEDSTSSTSTSSEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIREVQRHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGIEQSLLASDDCSVLPKKRIHIVAMTANTMSESAEECFANGMDAFVSKPVTLLKLKECLEKHLSSEKSAAKNSYYRTNWSVNVAVQNRFLIGYVLEALTIDQ* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0544 1021 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 393 - -
Psa6g0544 1021 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 392 983 - -
Psa6g0544 1021 PRINTS Bacterial sensor protein C-terminal signature 583 597 IPR004358 GO:0016310|GO:0016772
Psa6g0544 1021 PRINTS Bacterial sensor protein C-terminal signature 618 636 IPR004358 GO:0016310|GO:0016772
Psa6g0544 1021 PRINTS Bacterial sensor protein C-terminal signature 642 655 IPR004358 GO:0016310|GO:0016772
Psa6g0544 1021 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 412 IPR036097 GO:0000155|GO:0007165
Psa6g0544 1021 Coils Coil 346 366 - -
Psa6g0544 1021 CDD HisKA 374 408 IPR003661 GO:0000155|GO:0007165
Psa6g0544 1021 MobiDBLite consensus disorder prediction 788 835 - -
Psa6g0544 1021 MobiDBLite consensus disorder prediction 805 835 - -
Psa6g0544 1021 ProSiteProfiles Response regulatory domain profile. 840 982 IPR001789 GO:0000160
Psa6g0544 1021 MobiDBLite consensus disorder prediction 520 539 - -
Psa6g0544 1021 MobiDBLite consensus disorder prediction 499 552 - -
Psa6g0544 1021 Pfam Response regulator receiver domain 841 908 IPR001789 GO:0000160
Psa6g0544 1021 SMART REC_2 839 978 IPR001789 GO:0000160
Psa6g0544 1021 ProSiteProfiles Histidine kinase domain profile. 398 658 IPR005467 -
Psa6g0544 1021 SMART HKATPase_4 458 658 IPR003594 -
Psa6g0544 1021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 656 IPR003594 -
Psa6g0544 1021 Gene3D - 832 983 - -
Psa6g0544 1021 Coils Coil 181 212 - -
Psa6g0544 1021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 655 IPR036890 -
Psa6g0544 1021 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 392 983 - -
Psa6g0544 1021 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 393 - -
Psa6g0544 1021 CDD HATPase_EvgS-ArcB-TorS-like 463 655 - -
Psa6g0544 1021 Gene3D PAS domain 216 352 - -
Psa6g0544 1021 MobiDBLite consensus disorder prediction 505 519 - -
Psa6g0544 1021 SUPERFAMILY CheY-like 839 997 IPR011006 -
Psa6g0544 1021 Coils Coil 93 127 - -
Psa6g0544 1021 Gene3D - 411 662 IPR036890 -
Psa6g0544 1021 CDD REC_hyHK_CKI1_RcsC-like 841 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0544 Psa-Chr6 18006351 18011561 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0544 1 982 Histidine Kinase Gene Family AT5G10720 49.506 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g0544 HATPase_c 4.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0544 - - cam:101512841 1639.78