Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0543 ATGGTGGGGAACGAGCCTGTTTCTTGTTTTACAAAGTGTTCGTTTTTCTTTCAGAGGAAGAACACGCGTTCTCTGATTAGAAAGGTTGAGGTTTTTCAGTTGCTTTTGAAGTGTTTGAATGATTCGGGTTCTAAGGGGTGTAACCTTTCGTCTACGGATTTGCTTTGTTTGAAGGAGCTTTATTTGTTGTTGTATAGGTCTAAGATTCTTCTTGATTATTGCGATGTTGGTTTGAGTAAGGATGTTAGGGAGCAAGTTGAGTTTTTGTTGAACCAATCGAGGAGGGCTAAGTTATTAATTAATATGGGAGATGATTCCCTTAGGATTCAGTTCTTTTTATTTCTATATGAGTTTGAGAATGGGAAGGTTCCAAAATCGGATGAATTGCGGTGGTTTTATGTTGAGAAATTATGGATTGGTGATGTTGGTTGTTGTAGAGGTGAAATTGAGGCTTTGGAGGAACACGTTGTTAACCATGAGGGGGATATTGAGCCTACGACTTATGTGCTTAAAGGGTTGGTGGTGATGGCTCGGTATTGTAGGTTTTTTATTTTTGGTTTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAATCATAAGAAGCCAAAGATGGGTTTGATTACTCGAGAAATTGTTGAAACGTTTTTAATTATTCCGAAGGACTTTTTTTGTCTGATATCGTTGGATTTGATGAGAGACCTAGTGATTATTTCGACTGGTTAA 723 0.3776 MVGNEPVSCFTKCSFFFQRKNTRSLIRKVEVFQLLLKCLNDSGSKGCNLSSTDLLCLKELYLLLYRSKILLDYCDVGLSKDVREQVEFLLNQSRRAKLLINMGDDSLRIQFFLFLYEFENGKVPKSDELRWFYVEKLWIGDVGCCRGEIEALEEHVVNHEGDIEPTTYVLKGLVVMARYCRFFIFGFEEDELDLENGNHKKPKMGLITREIVETFLIIPKDFFCLISLDLMRDLVIISTG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0543 240 ProSiteProfiles U-box domain profile. 217 240 IPR003613 GO:0004842|GO:0016567
Psa6g0543 240 PANTHER U BOX DOMAIN-CONTAINING 11 75 - -
Psa6g0543 240 PANTHER U BOX DOMAIN-CONTAINING 75 240 - -
Psa6g0543 240 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 75 240 - -
Psa6g0543 240 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0543 Psa-Chr6 17906018 17906848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0543 2 240 U-box Gene Family AT1G29340 50.345 1.46e-75 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0543 - - mtr:MTR_2g018010 315.849