Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0542 ATGGATCAAGATGTGTTGGAAGAAGTAACAATCTTAGAAGAACCAGTTATAGCTGATTTTCAAAGACTCATGGAACTTACAGATTATACAGATCAAGGGTCATCTCAGTTGGCTTGTCTCATGAAACATTGGGAGTATAAGCAAGAAAACGCAGTTCGTCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGTTTAAAAAGGAGGAGAGTTCCGGCGGAGACAATTGTCTGGTTTCGATATTGGATGATGTTGTTCAAAACAAGACAGTTGAAATTGAGGCTGAGTATGAAACTGAAGGTTACTGGAAAGATCGGGCGATCGATTTGGAAAGACAGTTAGAGGCAAGTATTCGGAGAGAAGAGATATTAAAGGAAATGTTGCAAGAAAGTGTAGAGAATATGAAGAGACAATCCTCACCCGTGGAGGCAGTCTCACAGATTCTTAAGAGACAAGAAACTTTCTTACATTTTATACTTCAAAATGCACCTCTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTCTCTATAATCATTTTCCAGGTTTAAAAGAAGAGGACATCATCGGGAAAACGGAGGAAGAAATTTTTTCGGGATCAGGCGTGAAGGAGTCTGAAGATTTTAAAAGACAAGTAATGGAGAAAGGATTTCCCGCAAAAAGGGAAATAACTTATGAGACAGAACTATTTGGATCAAAGACATTTTTGATCTATGTAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTAAACTATATTGGAATGGAAGTAACAGATCAGGTGATAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGTAGTTCAGAAAGCAATGGAAACAGAACTTAATAAAACCATTCACATCACAGAGGAGACAATGAGAGAAAAACAATTGTTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTAGTGTTGTTGGCATGGCTAAAATTCTCTCTACAACAAAACTTGATAGGGAGCAAAGACAGCTATTGGATGCAATGATATCTTCAGGAGATTTGGTTCTTCAACTTATTAATGATTTACCTGATGTTTCCAAGGTTGATCTAGGTTAG 1116 0.3799 MDQDVLEEVTILEEPVIADFQRLMELTDYTDQGSSQLACLMKHWEYKQENAVRLLREELDNLSKQREEVEFKKEESSGGDNCLVSILDDVVQNKTVEIEAEYETEGYWKDRAIDLERQLEASIRREEILKEMLQESVENMKRQSSPVEAVSQILKRQETFLHFILQNAPLVIGHQDKELRYRFLYNHFPGLKEEDIIGKTEEEIFSGSGVKESEDFKRQVMEKGFPAKREITYETELFGSKTFLIYVEPVFSKAGETIGVNYIGMEVTDQVIKREKMAKLREEIVVQKAMETELNKTIHITEETMREKQLLATMSHEIRSPLSSVVGMAKILSTTKLDREQRQLLDAMISSGDLVLQLINDLPDVSKVDLG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0542 371 Coils Coil 52 75 - -
Psa6g0542 371 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 2 371 - -
Psa6g0542 371 SMART HisKA_10 306 371 IPR003661 GO:0000155|GO:0007165
Psa6g0542 371 Gene3D PAS domain 139 271 - -
Psa6g0542 371 SUPERFAMILY PYP-like sensor domain (PAS domain) 151 260 IPR035965 -
Psa6g0542 371 Pfam His Kinase A (phospho-acceptor) domain 308 369 IPR003661 GO:0000155|GO:0007165
Psa6g0542 371 CDD HisKA 306 367 IPR003661 GO:0000155|GO:0007165
Psa6g0542 371 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 2 371 - -
Psa6g0542 371 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 303 370 IPR036097 GO:0000155|GO:0007165
Psa6g0542 371 Coils Coil 123 143 - -
Psa6g0542 371 Gene3D - 272 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0542 Psa-Chr6 17887489 17890783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0542 2 371 Histidine Kinase Gene Family AT5G10720 63.613 8.08e-163 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0542 - - cam:101512841 579.326