Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0534 ATGCCTACCAATGGTAGCATTGATAGACCAAACACAAACCTAGTAATGGTGGCGGTAGACAAAGACAAGAACAGTGGCTATGCTTTTCGTTGGACAACTAATAATATTGATAACCCTATCATCATTGCAGTTCATGTTAAACCCAAAGACATTCCTCATCAAGAAGGTCAAGATCGCGAAGGCGTCAATGTTTTTCCTCCCGACGAAGAAGATGTAGCGAATGTTTTCGATCCCTTGCGTGAAATGTGTAACGATAATGTGGTAAAGATGAAAGAAGCCATAATCAATGATACTGACATTGCTAGAGGAATTTTGGAATACGCAAAGAGGAATTACGTCCAAAATATCGTTGTTGGTGCACCCTCTAGCTACACCAAGAATGTTCTCTCAAGGTCTCTAAACATGAGAACCATAAGCAAAAAATTTAAAGGCCACGACGATGTAGCAACAGCAGTAATAAAATCAGCTCCTGATTATAGTTCTGTCTACGTAATCGCGAAAGAAAAGATGGTAGAAAGTCGACCAGCAATAACGCCGTTGCAAAATGGAGTTGCATCTTGTAAATCAGAAAATGACCTAAGGTCGAACACATTTAAAAGAGGAGGAAGCACTAATAGTAGTAAATCAGGAAAATCACCACTACATGATAAACTAAAGAGTTCATTATCTACTAATAAATCATTGGAGAGTATTGAGTTATCGGGTCGTGGCCAAAGATCATCTTTTAATCACACTTCAAGCTTAAATGAAAATGAATCATCTCGTTTACATAAATATGGGCTAGTGGATGGGCAGAAATTAGAGAGGGGTTCAAGCACTGCATCAAACTCTCAAATACTAGGAGACATGGAAGCTGAGATGAAAGAATTGAGACTCAAACTTAGGCAAACTATGGAAATGTATAACTCGGCTTGCAAAGAAGCAATCTTAGCAAAAAATAAGGCGAACGAGATTAATAAATGGAAACTAGAGGAGCGAACGGTTGAGGAAGTTATGATGTCTCGAGAAGCAGCATTAGCGATGGCGGAAGTAGAGAAAGCTAAAGCAGTAGCTGCATTGAAAACAGTAGATGAAGCTATGAAAATGGCTGAAAAAGAAACACAAAAAAGATTACATGCAGAGAGAAAGGCTAGGAGAGAAATAGAAGAGCGAGATCAAGCACTAAACGTGATAGCTCGGACAGATGTTCGATATCGACAATACACCTTAGACGAAATTGAAAATGCTACCAAAAATTTCTCATTATCAATGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGTCAACTTGGTCATACACATGTTGCTATCAAGATTTTGAGACCTGATGCTCACCAGGGTAGAAAACAGTTCCTACAAGAGGTTGAGGTATTATGTAACATAAGACATCCAAATATGGTTCTCCTCCTTGGTGCTTGTCAAGATTATGGATGCTTGGTATATGAATACATGGACAATGGTAGCTTAGAAGATAGATTATTAAGAAAACATAATAGCCCTCCCATTCCATGGCAAAAACGTTTCGAAATATGTTACGAAATCGCAACTGCGCTTCTTTTCCTTCACCAAACAAAACCAGAATCCATTGTTCATAGAGACCTTAAACCAGCCAACGTTCTCCTAGACAAAAATTTTGTTAGCAAGATAAGTGATGTTGGTTTATCAAGATTAGTGCCACCTGGTGTAGCTGATTCTGTCACACAATATCACATGACTTCAGCAGCCGGAACATTGTGTTACATTGATCCTGAATATCAACAAACAGGAAAATTAACGACGAAATCGGATATTTATTCTTTAGGGATCATGTTTCTACAAATTATCACAGCCAGGCCTCCAATGGGACTTTCTCATCATGTTAAAAAGGCTATTGAAAATGGGAATTTTGTCGATATGCTTGATCCTGTTGTTACGGATTGGCCTGCTGAGGATGCTTTGGTGTTTGCGAAACTTGCATTGAGTTGTGCTGAGCTTAGTAAGAAAGATAGACCTGATCTTGCATTAGTAGTGATTCCGGAGCTTAGTCGATTCAAAGATTTGGGATGTAAGTTACAGAACCATCAACAGAATTTGAGCCATGCGCCGCGTCCTCCTACGTGTCCTCCTTCACGAAGTCCTCCACTTTGA 2133 0.3924 MPTNGSIDRPNTNLVMVAVDKDKNSGYAFRWTTNNIDNPIIIAVHVKPKDIPHQEGQDREGVNVFPPDEEDVANVFDPLREMCNDNVVKMKEAIINDTDIARGILEYAKRNYVQNIVVGAPSSYTKNVLSRSLNMRTISKKFKGHDDVATAVIKSAPDYSSVYVIAKEKMVESRPAITPLQNGVASCKSENDLRSNTFKRGGSTNSSKSGKSPLHDKLKSSLSTNKSLESIELSGRGQRSSFNHTSSLNENESSRLHKYGLVDGQKLERGSSTASNSQILGDMEAEMKELRLKLRQTMEMYNSACKEAILAKNKANEINKWKLEERTVEEVMMSREAALAMAEVEKAKAVAALKTVDEAMKMAEKETQKRLHAERKARREIEERDQALNVIARTDVRYRQYTLDEIENATKNFSLSMKIGEGGYGPVFKGQLGHTHVAIKILRPDAHQGRKQFLQEVEVLCNIRHPNMVLLLGACQDYGCLVYEYMDNGSLEDRLLRKHNSPPIPWQKRFEICYEIATALLFLHQTKPESIVHRDLKPANVLLDKNFVSKISDVGLSRLVPPGVADSVTQYHMTSAAGTLCYIDPEYQQTGKLTTKSDIYSLGIMFLQIITARPPMGLSHHVKKAIENGNFVDMLDPVVTDWPAEDALVFAKLALSCAELSKKDRPDLALVVIPELSRFKDLGCKLQNHQQNLSHAPRPPTCPPSRSPPL* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0534 710 Pfam Protein tyrosine and serine/threonine kinase 415 669 IPR001245 GO:0004672|GO:0006468
Psa6g0534 710 Coils Coil 364 384 - -
Psa6g0534 710 Gene3D Phosphorylase Kinase; domain 1 391 485 - -
Psa6g0534 710 Pfam Universal stress protein family 15 122 IPR006016 -
Psa6g0534 710 MobiDBLite consensus disorder prediction 690 710 - -
Psa6g0534 710 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 705 - -
Psa6g0534 710 SUPERFAMILY Protein kinase-like (PK-like) 394 671 IPR011009 -
Psa6g0534 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Psa6g0534 710 PANTHER OS02G0152300 PROTEIN 9 705 - -
Psa6g0534 710 ProSiteProfiles Protein kinase domain profile. 413 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0534 710 CDD STK_N 14 167 - -
Psa6g0534 710 Gene3D Transferase(Phosphotransferase) domain 1 486 693 - -
Psa6g0534 710 MobiDBLite consensus disorder prediction 194 254 - -
Psa6g0534 710 Coils Coil 280 300 - -
Psa6g0534 710 SMART serkin_6 413 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0534 710 MobiDBLite consensus disorder prediction 194 256 - -
Psa6g0534 710 Gene3D HUPs 3 141 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0534 Psa-Chr6 17638744 17642644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0534 90 683 Receptor kinase-like Gene Family AT5G12000 55.788 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa6g0534 PK_Tyr_Ser-Thr 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0534 - - gmx:100786386 827.009