Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0533 ATGACTACAAAAAAGATAACATGGAAATCCATGATCTTGATCTTAAATTGTTACAAGAGTAAATACCCTTTGGAGGAATCAAAGAAACAAGTTTTGAAACAAGGTTCTTTTCAAAGATTATGTTTATCAGATATAAGCAATTCAAGTTCAACTCAAGCTATTGAAGATATTTCAGTTTCTTTTGCTGGCTCTAAGCTTCATGCATTCACACTTGAGGAGCTTAAAGAAGCAACACATGGTTTTTCATGGAGTAATATGTTGGGTGAAGGCGGTTTCGGTCCGGTTTATAAAGGGTTTGTTGATGATAAGGTTAGACAAGGCTTAAAGGCTCAAACTGTTGCGGTTAAATGTTTGGATTTGGATGGTTTGCAAGGTCATAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGGCATCACCATCTTGTGAAGTTAATTGGATATTGTTGTGAAGATGAACATAGACTTTTGGTGTATGAGTACATGCCAAGAGGTAGCTTGGAGAGTCAACTATTCAGAAGATATGCTGCTGCTATGCCATGGTCAACAAGGATGAAAATTGCATTAGGTGCTGCTAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCTGATTATACGGCTAAACTCTCGGATTTTGGACTGGCTAAGGATGGCCCGGAAGGGGAAGAAACACATGTCACGACGCGCGTAATGGGAACACATGGTTATGCTGCTCCTGAGTACATCATGACAGGTCATCTTACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGACAAGTCCTTAGAATCAAAAAGAGGTAAGAGCTTGGTAGAATGGGCAAGACCTATGTTGAGAGATCCAAAGAAACTTGACAGAATCATAGACCGTAGACTTGAAGGACAGTTTCCTATGAAAGGAGCTTTGAAAGTTTCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTGTATGAGTGATGTTGTTAAGATTTTGGAACCACTTCAAGATTTTGATGATGTTTTTGTAGGTCCATTTGTTTATGTTGCTGTAAGTGAAAATGGTGACAAAGATCAAATATAG 1164 0.384 MTTKKITWKSMILILNCYKSKYPLEESKKQVLKQGSFQRLCLSDISNSSSTQAIEDISVSFAGSKLHAFTLEELKEATHGFSWSNMLGEGGFGPVYKGFVDDKVRQGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLRHHHLVKLIGYCCEDEHRLLVYEYMPRGSLESQLFRRYAAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSLESKRGKSLVEWARPMLRDPKKLDRIIDRRLEGQFPMKGALKVSMLAFKCLSHHPNPRPCMSDVVKILEPLQDFDDVFVGPFVYVAVSENGDKDQI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0533 387 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Psa6g0533 387 PANTHER KINASE 1B 21 384 - -
Psa6g0533 387 PANTHER OS01G0588500 PROTEIN-RELATED 21 384 - -
Psa6g0533 387 ProSiteProfiles Protein kinase domain profile. 81 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g0533 387 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Psa6g0533 387 CDD STKc_IRAK 87 362 - -
Psa6g0533 387 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Psa6g0533 387 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Psa6g0533 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0533 Psa-Chr6 17599482 17602281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0533 67 359 Glycoside Hydrolase AT3G07070 53.041 8.49e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa6g0533 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0533 - - gmx:100802636 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0533 6 17599482 17602281 Psa6g0533 6 17599482 17602281 ECH
Psa5g0596 5 47649593 47653644 Psa6g0533 6 17599482 17602281 ECH
Psa4g0425 4 26038112 26041085 Psa6g0533 6 17599482 17602281 ECH