Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0520 ATGAAAACAAATGGATTTCTTTTAGAAAAAGAAAAGATTAATATGCAAGAGTTTGGGGATAACACTAACTTCGTTAATACTGTGTCAACAGAAAAATCCATGGGGTGGGGTCACCTTGGAAGACGTGGCTCAGATTCCGGCAACGACGCCGATGCAGGTCCGAGCACCAGCACGGCGGAGCAACGCCGTTTTCCTTCAGCTGCGCAGCCAGAGATGATGAGAGCAGCTGAAAAAGACGATCAGTACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAATGAGACGAAGCTTTTAGGGCAAATGCTTTACTTTGTTCTCACAACAGGCTCAGGACAACAAACACTTGGAGAGGAATACTGTGACATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCAACACCGGCCAGGCGCGCTTTGTTTATTGTATACCAAACGGCGATTCCATACATCGCAGAACGGATTAGTTCTAGAATTGCTTCCCAAGGCATTATCCTGTCTGATTACGAGTATGCTGAGATTTTTGGTGAAAGTGCCCGCGGGAGTAGTAGTAGTCGGGTTTCTTCGGGGAGTGAACTTGCTGCTTCGTCTGCCTCAGGGCAGTCTACTTCAACTATGACGAGGTTGAAGGAGAAGCTCTGTGGATTTTGGTTGCGTATGGTTCAGAAATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGCTGGTTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGCCTTTATTATCATATATCCAAACGTACTTCTGCCATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGACCCAGATATCAAATATTGGGAGTATTTTTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTTCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCCACCATACATCAGCAGGACACGGTTTGCCTGTTCTAAACGAAGAAGGTAATTTGGCATCTCCAGAAGCTGATGAAGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCCTCATGCAACCAGTGGTGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCCACAGCCACTTCATGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAGAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTTTGTATTTATTACTCAGACTTCTAG 1293 0.4594 MKTNGFLLEKEKINMQEFGDNTNFVNTVSTEKSMGWGHLGRRGSDSGNDADAGPSTSTAEQRRFPSAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYFVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASQGIILSDYEYAEIFGESARGSSSSRVSSGSELAASSASGQSTSTMTRLKEKLCGFWLRMVQKWPTMLPFVRELLQLVLRANLMLFYFEGLYYHISKRTSAIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFATHHTSAGHGLPVLNEEGNLASPEADEGSWVSGSSSSEPHATSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYYSDF* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0520 430 ProSiteProfiles Zinc finger RING-type profile. 376 414 IPR001841 -
Psa6g0520 430 Pfam Pex2 / Pex12 amino terminal region 79 313 IPR006845 -
Psa6g0520 430 PANTHER PEROXISOME BIOGENESIS FACTOR 10 60 427 - -
Psa6g0520 430 SMART ring_2 376 413 IPR001841 -
Psa6g0520 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 427 IPR013083 -
Psa6g0520 430 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 60 427 - -
Psa6g0520 430 MobiDBLite consensus disorder prediction 40 73 - -
Psa6g0520 430 ProSitePatterns Zinc finger RING-type signature. 391 400 IPR017907 -
Psa6g0520 430 MobiDBLite consensus disorder prediction 49 64 - -
Psa6g0520 430 SUPERFAMILY RING/U-box 375 419 - -
Psa6g0520 430 Pfam Zinc finger, C3HC4 type (RING finger) 375 419 - -
Psa6g0520 430 CDD RING-HC_PEX10 375 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0520 370 426 C3H Transcription Factor Family AT4G28270 32.877 3.67e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0520 K13346 - gmx:100816042 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0520 6 17233209 17239606 Psa6g0520 6 17233209 17239606 ECH