Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0513 ATGGACGGACATAATCTTCCTTACAATCCCCGTACTGTCGATGAAGTCTTTCGGGATTTCAAAGGTCGCAGAACTGCATTAGTCAAAGCCCTCTCCACTGATGTCGATGAGTTCTTCCGGCAGTGTGATCCCGATAAGGAAAACCTCTGTCTTTATGGATCTCCCAGTGAGCAGTGGGAGGTGAATCTACCAGCTGAGGAAGTGCCGCCGGAGATTCCGGAGCCAGCATTGGGTATTAACTTTGCGAGAGATGGGATGCTAGAAAAGGATTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTAATGTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGATAAAGCGGATAGGAAGAAACTATTTGATATGATAAATGATCTTCCCACAATCTTTGAAACTATTACAGGGGTTGTCAAGAAACAAGGAAAGGAAAAGTCGTCATCGGTTTCTAATAATAGCAGTACCAAATCTAAAGCAAACCCTGAGCAAGGTTCTGAACCTCAGGCAAATTTTTCAAAACCAATGGCAATACAAATGCAAGCAAAGGAAAATGACGAGGATGATCTTGGCGTGGATGAGGAAGATGAGGAGGATGAGGAAGAGCAGGAAGAGACTTTTTGCGGGGCATGCGGAGAGAGCTATACAACAAACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGAAAATGTGTGAAGATTACTCCAGCAAGAGCTGAGCATATCAAACAGTATAAATGTCCATCTTGCAGCCACAAGAGAGCTCGCCCTAGTGGATTGATATAG 807 0.4411 MDGHNLPYNPRTVDEVFRDFKGRRTALVKALSTDVDEFFRQCDPDKENLCLYGSPSEQWEVNLPAEEVPPEIPEPALGINFARDGMLEKDWLSLVAVHSDAWLMSVAFYFGARFGFDKADRKKLFDMINDLPTIFETITGVVKKQGKEKSSSVSNNSSTKSKANPEQGSEPQANFSKPMAIQMQAKENDEDDLGVDEEDEEDEEEQEETFCGACGESYTTNEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSHKRARPSGLI* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0513 268 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Psa6g0513 268 ProSitePatterns Zinc finger PHD-type signature. 211 257 IPR019786 -
Psa6g0513 268 SMART PHD_3 210 258 IPR001965 -
Psa6g0513 268 MobiDBLite consensus disorder prediction 146 181 - -
Psa6g0513 268 MobiDBLite consensus disorder prediction 146 208 - -
Psa6g0513 268 ProSiteProfiles Zinc finger PHD-type profile. 208 260 IPR019787 -
Psa6g0513 268 PANTHER CPG BINDING PROTEIN 6 264 IPR045104 GO:0006355|GO:0042393
Psa6g0513 268 Pfam PHD-finger 210 259 IPR019787 -
Psa6g0513 268 MobiDBLite consensus disorder prediction 190 208 - -
Psa6g0513 268 SUPERFAMILY FYVE/PHD zinc finger 199 262 IPR011011 -
Psa6g0513 268 CDD PHD_AL_plant 210 260 IPR044104 -
Psa6g0513 268 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 264 - -
Psa6g0513 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 259 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0513 Psa-Chr6 16901732 16904085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0513 1 263 Alfin-like Transcription Factor Family AT3G42790 65.019 6.96e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Psa6g0513 Alfin 6.7e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0513 - - cam:101493315 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0513 6 16901732 16904085 Psa6g0513 6 16901732 16904085 ECH