Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0509 ATGGGTTATTATTATTATTACTATTCCATATTGTGTGTTATTTTGTTTTTATCCGTTGAAATATCATTGGCTTCTTCAATTGAAGATCAAAAGAGAGATAAGATAAGTTGGTTACCAGGGCAACCAAAGAATGTTGGATTTGATCAGTATTCAGGTTATGTGACTGTGAATGAACAGAATGGAAGAGCACTGTTTTACTGGTTGACTGAAGCACCACTGAGTCATGGACCCAATTCAAAGCCACTAGTTTTATGGCTTAGTAGTGGTCCTGGTTGTTCTTCTATTGCTTACGGTGCTTCCCAAGAAATTGGCCCTTTTCATATTAACTCTGATGGCAAATCACTTTACTTCAATCCTTATGCTTGGAACAAGCTGGCAAATATATTGTTCCTTGAATCTCCTGCTGGTGTTGGTTTTTCTTATTCTAATAAAACATCAGATCTCTACACATTTGGTGACCAGAAAACAGCTGAAGATTCATATATTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGATAAGTTATGCAGGTCATTATGCTCCTCAATTGGCTCAAATTGTTTACCAGAGAAACAAGGGAATCAATAATCCAGTTATCAATTTTAAGGGATTTTTGGTTGGAAATGGTGTTACTGATGATTATCATGATTTAGTAGGAACGTTCGAGTACTGGTGGACACACGGTTTGATTTCAGATTCTACATATAAACTTCTAAGAGCTGCATGTGACTTTGGATCATCTCAGCATCCATCAGTGCAGTGTACTCAGGCTCTTAAGGTTGCAGCTGCTGAGCAAGGAGACATTGATCTATATAGCATTTATTCGCCGCTTTGTAACAATACATCAACGCTTAAACGCAGCTTGAACGATCGTTATACATGGATGTCTAGAGCATATGATCCATGTACCGAAAGGTATTCTGATTCGTATTTCAACCGTCCGGAAGTTCAAAAGGCACTTCATGCCAATGTAACAGGGATTCCACATATATGGAAGGGATGCAGTGATGTTGTTGGGAACTATTGGACTGATTCGCCGTTGTCTATGCTTCCTATATATCATGAACTTATCAATGCTAGTCTAAGGATATGGGTTTTCAGTGGAGACACTGATGCTATAGTTCCACTAACCGCCACTCGATATTCTATTAATGCATTGAAGCTTCCGACCGTTGTCAATTGGTATCCTTGGTATGACAGTGGCAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGGCTCACATTGGTGACAGTAAGAGGAGCTGGACATGAGGTTGCTCTTCATAAGCCTCGCCAAGCGTTTATTCTTTTTAGATCATTTTTGGAGAACAAGTACATGCCATCCTCAAGTTAA 1386 0.3882 MGYYYYYYSILCVILFLSVEISLASSIEDQKRDKISWLPGQPKNVGFDQYSGYVTVNEQNGRALFYWLTEAPLSHGPNSKPLVLWLSSGPGCSSIAYGASQEIGPFHINSDGKSLYFNPYAWNKLANILFLESPAGVGFSYSNKTSDLYTFGDQKTAEDSYIFLVNWFERFPQYKHREFYIAGISYAGHYAPQLAQIVYQRNKGINNPVINFKGFLVGNGVTDDYHDLVGTFEYWWTHGLISDSTYKLLRAACDFGSSQHPSVQCTQALKVAAAEQGDIDLYSIYSPLCNNTSTLKRSLNDRYTWMSRAYDPCTERYSDSYFNRPEVQKALHANVTGIPHIWKGCSDVVGNYWTDSPLSMLPIYHELINASLRIWVFSGDTDAIVPLTATRYSINALKLPTVVNWYPWYDSGKVGGWSQVYKGLTLVTVRGAGHEVALHKPRQAFILFRSFLENKYMPSSS* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0509 461 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Psa6g0509 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 459 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 Gene3D - 313 349 - -
Psa6g0509 461 PANTHER CARBOXYPEPTIDASE 13 459 - -
Psa6g0509 461 Gene3D - 360 453 - -
Psa6g0509 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Psa6g0509 461 SUPERFAMILY alpha/beta-Hydrolases 31 458 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0509 Psa-Chr6 16865384 16869497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0509 323 455 Calmodulin-binding Proteins AT2G22960 30.657 4.06e-12 63.2