Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0489 ATGAACTCTCTCTCCCTCCACAACGCTAATGCAACCACAACACACACACTCCACTTCCACTCTCACCACACCTTCATCCACTCCAAACCCACCCCTTCCTTCCTCTTCCTCAAATCAAAACCCCCAACCCATACACAATGCTGCATCAACAACAACAACAGCAACAACATTATCGACATTGATATGGTAAAAACCAAACAAGGAACCTACGTACCAAAACAGAACAAAGTCGTTGTTCTCTGGGACCTCGACAACAAACCCCCACGCGGTCCACCTTACGACGCCGCACTCTCTCTCAAAACCCTAGCCGAACGCTTCGGCGAACTCACTGACATCTCCGCTTACGCCAACCGTCACGCCTTCATTCATCTCCCTCAATGGGTCCGCGACGAACGCCGTCAACGGAAAAACCTCGACGTCCTCGAACGCAAAGGAATCGTCAATCCCTCCGAGCCCTACCTATGCTCCGTCTGCGGTCGGAAATGCAAAACCAACGTGGATCTTAAGAAACACTTCAAACAGCTTCACCAGCGAGAACGGCAGAAGAAGCTTAACCGTTTGAATTCGCTGAAGGGGAAGAAGAGACAGAAGTATAAGGAAAGGTTTGTTAGTGGGGACCAGAAGTATAATGATGCGGTTAGAGAGATTGTTACGCCGAGAGTTGGGTATGGTCTTGATTCCGAGTTGAGGCGGGCGGGGGTTTTTGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCTGATTGGGCTTTGAAGAAACAGATGATGCATTCTATGAGTAGAGGGATTGATTGGTTGCTTTTGGTTTCGGATGATTCGGATTTTAGCGAGATGTTGAGGAAGGCCAGAGAGGCGAATTTAGGGACTGTTGTTGTTGGGGATGTTGATAGAGCTTTGGGGAGACATGCTGATTTGTGGGTTCCTTGGAATGCTGTTGAGAATGGCGAGGTTGTGGATATGGATTTGGTGACAAAGAGTAGAGATAGGAGAAGAACAAGAATGGATACAACGGCGTCGACGGCAGTGGATGATTTTGGTGATGTGTTGTTTTTTCAAGAGGATGAGGAAATGGAAATGGAGGAAGATTTTATGTTGGAGTATAGCCAAGACGAGGATTCGGATGAATATACAACTGATGATGAAGAAGATGATGATGATGATGGGTTTTATATTTATTGA 1176 0.4711 MNSLSLHNANATTTHTLHFHSHHTFIHSKPTPSFLFLKSKPPTHTQCCINNNNSNNIIDIDMVKTKQGTYVPKQNKVVVLWDLDNKPPRGPPYDAALSLKTLAERFGELTDISAYANRHAFIHLPQWVRDERRQRKNLDVLERKGIVNPSEPYLCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLNSLKGKKRQKYKERFVSGDQKYNDAVREIVTPRVGYGLDSELRRAGVFVKTVEDKPQAADWALKKQMMHSMSRGIDWLLLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVVDMDLVTKSRDRRRTRMDTTASTAVDDFGDVLFFQEDEEMEMEEDFMLEYSQDEDSDEYTTDDEEDDDDDGFYIY* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0489 391 CDD PIN_LabA-like 163 293 - -
Psa6g0489 391 PANTHER - 45 363 - -
Psa6g0489 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 181 IPR013087 -
Psa6g0489 391 ProSitePatterns Zinc finger C2H2 type domain signature. 155 176 IPR013087 -
Psa6g0489 391 PANTHER OS06G0166200 PROTEIN 45 363 - -
Psa6g0489 391 Coils Coil 173 193 - -
Psa6g0489 391 MobiDBLite consensus disorder prediction 366 391 - -
Psa6g0489 391 Gene3D - 70 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0489 Psa-Chr6 16156260 16159986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0489 2 364 C2H2 Transcription Factor Family AT5G52010 58.073 5.85e-158 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g0489 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0489 - - tcc:18591156 457.603