Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0487 ATGATGAAAGGTTTGTCCATAGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAAAAAGTGCTTCTTCAGCAACCAAGAATGAAAAGGCAAGTCTAGAACCACAAACCAAAAGGAAGAGAAATCTCCCAGGCCACCCAGACCCTGAGGCAGAAGTAATAGCCTTGAGTCCCCAAACTCTGTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGACCAAAATCTTCAGCTTCATAAAAGAGGACATAACTTACCATGGAAGCTAAAGAAAAGAAACAGCAATGAAGTCATAAGAAAGAAAGTCTATGTATGTCCAGAACCAGCATGTGTTCACCATGACCCTTCAAGGGCATTAGGAGACCTCACTGGAATCAAGAAGCACTTTTTCAGAAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAGTGTTCCAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGAATGTGGAACTCTTTTTTCAAGAAGGGACAGTTTTATCACTCATAGAGCCTTCTGTGATGTTCTATCACATGAGAGTGCTATATCAATGTCAGCAGTGAACCCTCTATTCTCTCATCACTCACAATTTCATAGCCATGGTTTTCAACCACCAACCCTAAAAAAAGAACAAGACTTCAACAATTTAAGACCTTCAGAGATACCATCATGGTTATTTCCATCTCACATGAACCATTATGATCAAAACCCTAACCCTACAAGTCTTTTTCCTTCAAATTTCAACTCCAACAATATAATCACTAGTTCTTCTCCACACATGTCAGCCACTAGTTTACTGCAAAAAGCATCACAAATAGGTGTAACAGTAAGCAAAACTGATCAAGAACATTGTAGGTCCTCTCAGTTAATGCAAACTCACGTGCCTTTTGAATATAAAACACTGTATATGAATTCATCTTCACCTGTTTCTGGAATAGTTATGCCTTCACGTGAAGAAATAGCGACTGGTTTTTCTCATTGTTTGGCTCCATATGGGAATAAAGCTGCAATAGCCTCTGAATGCTTTGAAGGAGGTGTCACTGTTACTGCTACAAATACTGCTACAAATACAACAAATACAGAAGAATCTTCTCTTTTGCATGATGTGATATTTGGTAATGAAAGTTCACAATTTGAAGGTGTTGTTACTACCATGAGAGGAATGTTTGATACACAAAGAGGTAGTAATAATAATAACTTTGAGGAATTTGTTTCCAAATCAACACAAACACAATATTCCCAATTTGGTAAAAGCAACAATGATGATGAAATGACAAGGGACTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATTTGTTCAATATATCTGGAATTAATGATGATCCTTTGGGTTCTTTATCTTATGGTAAGCAAAATCATAATCAAAATCCTTGGAGAGGCTAA 1464 0.3695 MMKGLSIDENMSNLTSASSEKSASSATKNEKASLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSNEVIRKKVYVCPEPACVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCECGTLFSRRDSFITHRAFCDVLSHESAISMSAVNPLFSHHSQFHSHGFQPPTLKKEQDFNNLRPSEIPSWLFPSHMNHYDQNPNPTSLFPSNFNSNNIITSSSPHMSATSLLQKASQIGVTVSKTDQEHCRSSQLMQTHVPFEYKTLYMNSSSPVSGIVMPSREEIATGFSHCLAPYGNKAAIASECFEGGVTVTATNTATNTTNTEESSLLHDVIFGNESSQFEGVVTTMRGMFDTQRGSNNNNFEEFVSKSTQTQYSQFGKSNNDDEMTRDFLSLGAFSQRDLFNISGINDDPLGSLSYGKQNHNQNPWRG* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0487 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 463 - -
Psa6g0487 487 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 11 463 - -
Psa6g0487 487 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Psa6g0487 487 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Psa6g0487 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Psa6g0487 487 MobiDBLite consensus disorder prediction 33 48 - -
Psa6g0487 487 Gene3D Classic Zinc Finger 123 203 - -
Psa6g0487 487 MobiDBLite consensus disorder prediction 1 49 - -
Psa6g0487 487 MobiDBLite consensus disorder prediction 8 32 - -
Psa6g0487 487 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Psa6g0487 487 Gene3D Classic Zinc Finger 47 114 - -
Psa6g0487 487 SMART c2h2final6 110 140 IPR013087 -
Psa6g0487 487 SMART c2h2final6 68 90 IPR013087 -
Psa6g0487 487 SMART c2h2final6 145 165 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0487 Psa-Chr6 16056782 16060199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0487 7 299 IDZ Gene Family AT1G55110 59.394 1.83e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g0487 zf-C2H2_jaz 5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0487 K25870 - vvi:100257789 437.573